Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana

The genome of the model plant Arabidopsis thaliana has been sequenced by an international collaboration, The Arabidopsis Genome Initiative. Here we report the complete sequence of chromosome 5. This chromosome is 26 megabases long; it is the second largest Arabidopsis chromosome and represents 21% of the sequenced regions of the genome. The sequence of chromosomes 2 and 4 have been reported previously and that of chromosomes 1 and 3, together with an analysis of the complete genome sequence, are reported in this issue. Analysis of the sequence of chromosome 5 yields further insights into centromere structure and the sequence determinants of heterochromatin condensation. The 5,874 genes encoded on chromosome 5 reveal several new functions in plants, and the patterns of gene organization provide insights into the mechanisms and extent of genome evolution in plants.     

A difference in creatine uptake between pectoralis and thigh muscles of the chicken

Zusammenfassung Intravenös verabreichte Tracerdosis von¹⁴C-Kreatin führt beim Huhn zur viermal höheren Aufnahme im Biceps femoris als im Musculus pectoralis. Dieser muskuläre Unterschied fällt fort, wenn gleichzeitig grosse Mengen nicht-radioaktiven Kreatins gegeben werden.

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Supported in part by United States Public Health Service Grant Nos. NSO6807 and HEO6312.     

Effects of ATP and vanadate on calcium efflux from barnacle muscle fibres

Calcium ions carry the inward current during depolarization of barnacle muscle fibres and are involved in the contraction process. Intracellular ionized calcium ([Ca2+]i) in barnacle muscle, as in other cells, is kept at a very low concentration, against a large electrochemical gradient. This large gradient is maintained by Ca2+ extrusion mechanisms. When [Ca2+]i is below the contraction threshold, Ca2+ efflux from giant barnacle muscle fibres is, largely, both ATP dependent and external Na+ (Na+0) dependent (see also refs 5,6). When [Ca2+]i is raised to the level expected during muscle contraction (2-5 muM), most of the Ca2+ efflux from perfused fibres is Na0 dependent; as in squid axons, this Na+0-dependent Ca2+ efflux is ATP independent. Orthovanadate is an inhibitor of (Na+ + K+) ATPase and the red cell Ca2+-ATpase. We report here that vanadate inhibits ATP-promoted, Na+0-dependent Ca2+ efflux from barnacle muscle fibres perfused with low [Ca2+]i (0.2-0.5 microM), but has little effect on the Na+0-dependent, ATP-independent Ca2+ efflux from fibres with a high [Ca]i (2-5 microM). Nevertheless, ATP depletion or vanadate treatment of high [Ca2+]i fibres causes an approximately 50-fold increase of Ca2+ efflux into Ca2+-containing lithium seawater. These results demonstrate that both vanadate and ATP affect Ca2+ extrusion, including the Na+0-dependent Ca2+ efflux (Na-Ca exchange), in barnacle muscle.     

Dendritic spikes as a mechanism for cooperative long-term potentiation

Strengthening of synaptic connections following coincident pre- and postsynaptic activity was proposed by Hebb as a cellular mechanism for learning. Contemporary models assume that multiple synapses must act cooperatively to induce the postsynaptic activity required for hebbian synaptic plasticity. One mechanism for the implementation of this cooperation is action potential firing, which begins in the axon, but which can influence synaptic potentiation following active backpropagation into dendrites. Backpropagation is limited, however, and action potentials often fail to invade the most distal dendrites. Here we show that long-term potentiation of synapses on the distal dendrites of hippocampal CA1 pyramidal neurons does require cooperative synaptic inputs, but does not require axonal action potential firing and backpropagation. Rather, locally generated and spatially restricted regenerative potentials (dendritic spikes) contribute to the postsynaptic depolarization and calcium entry necessary to trigger potentiation of distal synapses. We find that this mechanism can also function at proximal synapses, suggesting that dendritic spikes participate generally in a form of synaptic potentiation that does not require postsynaptic action potential firing in the axon.     

Direct detection of a microlens in the Milky Way.

The nature of dark matter remains mysterious, with luminous material accounting for at most approximately 25 per cent of the baryons in the Universe. We accordingly undertook a survey looking for the microlensing of stars in the Large Magellanic Cloud (LMC) to determine the fraction of Galactic dark matter contained in massive compact halo objects (MACHOs). The presence of the dark matter would be revealed by gravitational lensing of the light from an LMC star as the foreground dark matter moves across the line of sight. The duration of the lensing event is the key observable parameter, but gives non-unique solutions when attempting to estimate the mass, distance and transverse velocity of the lens. The survey results to date indicate that between 8 and 50 per cent of the baryonic mass of the Galactic halo is in the form of MACHOs (ref. 3), but removing the degeneracy by identifying a lensing object would tighten the constraints on the mass in MACHOs. Here we report a direct image of a microlens, revealing it to be a nearby low-mass star in the disk of the Milky Way. This is consistent with the expected frequency of nearby stars acting as lenses, and demonstrates a direct determination of a lens mass from a microlensing event. Complete solutions such as this for halo microlensing events will probe directly the nature of the MACHOs.     

Occurence and effect of Chrysomyxa pirolata cone rust on Picea pungens in Utah

In a rare 1969 epidemic, spruce cone rust caused by Chrysomyxa pirolata infected 40 – 100 percent of trees and 20 – 67 percent of cones on riparian Colorado blue spruce on plots located in a 2200 – 2400 m elevational zone in Huntington Canyon of central Utah. Uredinial and telial sporulation on Pyrola spp. began in mid - June, a time closely correlated with opening of pistillate spruce cones. Come phenology and host habitat, as influenced by elevation, are apparently important factors in the restricted niche of the cone rust fungus in Utah. Several preceding consecutive years with extended periods of spring and fall moisture were associated with occurrence of the epidemic, although no cause - and - effect relationship was established. Weather records indicate that these events are infrequent in this climatic zone, and there was no detectable recurrence of cone rust for at least 9 years following 1969. Outwardly normal seeds developed in diseased cones, but seed germinability was reduced by 25 percent. Aecial spore masses between cone scales, cone resinosis, and distortion of cone scales prevented seed dispersal to the extent that the seed crop was effectually destroyed.     

Diversity, phenology, and elevational distribution of Ephemeroptera, Plecoptera, and Trichoptera in American Fork Canyon, Utah

Although the aquatic insect fauna of Utah and their associated adult forms are well documented taxonomically and biogeographically, little is known about seasonal and elevational patterns of aquatic insect diversity in individual Wasatch streams. We selected the American Fork River, a relatively pristine stream with little anthropogenic disturbance, as our target stream to investigate elevational distribution and seasonal phenology of adult forms of Ephemeroptera, Plecoptera, and Trichoptera (EPT). From April to October in 2003 through 2005, a total of 71 adult forms of EPT species were documented along the American Fork River. No single sampling period captured more than 30 species, and richness per sampling period averaged 8 species for all sites combined. The mid-elevational site (1862 msl) was the most species rich, with 54 species of transitional fauna captured along the elevational gradient. As such, this site is an important reference for maximum potential richness. Plecoptera emerged earlier in the year than Trichoptera, with the Plecoptera-dominated community being most rich in June, and the Trichoptera-dominated community being most rich in August. We observed 3 distinct seasonal species suites and 3 elevationally zoned community assemblages that were recurrent in their timing and location from year to year. The compiled species lists, life histories, and preliminary investigation of ecological trends provide a firm basis for further systematic studies on the ecology, water quality, and conservation of the aquatic insects of the American Fork River and similar mountain streams, particularly in the Wasatch region. Aunque la fauna de insectos acuáticos de Utah y sus formas adultas asociadas están bien documentadas taxonómica y biogeográficamente, se conoce poco sobre los patrones de distribución estacionales y altitudinales de la diversidad de insectos acuáticos en arroyos individuales de la cordillera Wasatch. Seleccionamos el Río American Fork, un arroyo relativamente prístino con poca perturbación antropogénica, como nuestro objetivo para investigar la distribución altitudinal de las formas adultas de Ephemeroptera, Plecoptera y Trichoptera (EPT), así como su fenología estacional. De abril a octubre del año 2003 al 2005, se documentó un total de 71 formas adultas de especies de EPT a lo largo del Río American Fork. No se encontraron más de 30 especies en ninguno de los períodos de muestreo, y combinando los datos de todos los sitios, el promedio de especies por período fue ocho. El sitio de elevación media (1862 msnm) fue el más rico con 54 especies constituidas por una fauna transicional entre los sitios a lo largo del gradiente de elevación, y como tal éste es un importante punto de referencia para determinar el máximo potencial de riqueza de especies. Los plecópteros aparecieron más temprano en el año que los tricópteros—la comunidad predominada por Plecoptera fue más rica en especies en junio—mientras que la comunidad predominantemente Trichoptera alcanzó su mayor riqueza en agosto. Observamos tres distintos conjuntos estacionales de especies y tres comunidades distribuidas por elevación, las cuales fueron recurrentes en su temporalidad y localización año tras año. La lista recopilada de especies, las historias de vida y la investigación preliminar de tendencias ecológicas aportan una firme base para más estudios sistemáticos y ecológicos, así como de calidad de agua y conservación de los insectos acuáticos del Río American Fork y otros arroyos semejantes a este, particularmente en la región de la cordillera Wasatch.