Ecological investigation of a suspected spawning site of Colorado squawfish on the Yampa River, Utah

On 5 July 1981, 13 adult Colorado squawfish were found in spawning condition at river mile 16.5 in the Yampa River, a major tributary to the Green River. An investigation was undertaken to quantitatively describe this section of the river to gain insights on the spawning requirements of this endangered species. The substrate at the suspected spawning site was cobble with large interstitial spaces devoid of organics, silts, or clays. It appeared that larvae of several fish species utilized these cobble areas and the associated voids. Diurnal sampling indicated that larval drift occurred between 0100 and 0125 hours. Substrate size also appeared to be a dominant factor in fish distribution. Feeding intensities of these fish corresponded to macroinvertebrate drift.         

Sources of variation in counts of meristic features of Yellowstone cutthroat trout ( Oncorhynchus clarki bouvieri )

We determined variability in counts of meristic features (pyloric caecae, vertebrae, pelvic fin rays, gillrakers, basibranchial teeth, scales above the lateral line, and scales in the lateral series) of Yellowstone cutthroat trout ( Oncorhynchus clarki bouvieri ) by 3 independent readers, by the same reader on 3 different occasions, and among fish from 12 sampling sites within a 650-km 2 watershed. Genetic purity of the cutthroat trout was determined by electrophoretic analysis. Significant differences in meristic counts were observed among 3 readers and among sampling sites, but not among 3 occasions by a single reader. Scale counts were within the reported range for Yellowstone cutthroat trout, but counts of other structures (pyloric caecae, gillrakers, vertebrae) were as similar to rainbow trout as to Yellowstone cutthroat trout. Meristic counts identified the fish as cutthroat trout; however, variation among readers and sampling sites, as well as within the species, limits their use when identifying genetically pure cutthroat trout or assessing possible integration with rainbow trout.     

The growth of mathematical knowledge—Introduction of convex bodies

The article addresses the topic of the growth of mathematical knowledge with a special focus on the question: How are mathematical objects introduced to mathematical practice? It takes as starting point a proposal made in a previous paper which is based on a case study on the introduction of Riemann surfaces. The claim is that (i) a new object first refers to previously accepted objects, and that (ii) reasoning is possible via a correspondence to the objects with reference to which it is introduced. In addition Riemann surfaces are geometrical objects, i.e., they are placed in a geometrical context, which makes new definitions possible. This proposal is tested on a case study on Minkowski’s introduction of convex bodies. The conclusion is that the proposal holds also for this example. In both cases we notice that in a first stage is a close connection between the new object and the objects it is introduced with reference to, and that in a later stage, the new object is given an independent definition. Even though the two cases display similarity in these respects, we also point to certain differences between the cases in the process of the first stage. Overall we notice the fruitfulness of representing problems in different contexts.     

Initial sequencing and analysis of the human genome

The human genome holds an extraordinary trove of information about human development, physiology, medicine and evolution. Here we report the results of an international collaboration to produce and make freely available a draft sequence of the human genome. We also present an initial analysis of the data, describing some of the insights that can be gleaned from the sequence.     

Hydrogen bonding and biological specificity analysed by protein engineering

The role of complementary hydrogen bonding as a determinant of biological specificity has been examined by protein engineering of the tyrosyl-tRNA synthetase. Deletion of a side chain between enzyme and substrate to leave an unpaired, uncharged hydrogen-bond donor or acceptor weakens binding energy by only 0.5-1.5 kcal mol-1. But the presence of an unpaired and charged donor or acceptor weakens binding by a further approximately 3 kcal mol-1.     

The Bohr effect and the red cell 2–3 DPG and Hb content in sherpas and europeans at low and at high altitude

Riassunto Europei e Sherpas hanno mostrato, dopo una permanenza di 3–4 giorni ad una altitudine di circa 5000 metri, normali P₅₀ (a pH 7.4 ed a pH 6.8) ed effetto Bohr (molto variabile negli Europei) ed elevato contenuto ematico di 2–3 DPG.     

A physical map of the chicken genome

Strategies for assembling large, complex genomes have evolved to include a combination of whole-genome shotgun sequencing and hierarchal map-assisted sequencing. Whole-genome maps of all types can aid genome assemblies, generally starting with low-resolution cytogenetic maps and ending with the highest resolution of sequence. Fingerprint clone maps are based upon complete restriction enzyme digests of clones representative of the target genome, and ultimately comprise a near-contiguous path of clones across the genome. Such clone-based maps are used to validate sequence assembly order, supply long-range linking information for assembled sequences, anchor sequences to the genetic map and provide templates for closing gaps. Fingerprint maps are also a critical resource for subsequent functional genomic studies, because they provide a redundant and ordered sampling of the genome with clones. In an accompanying paper we describe the draft genome sequence of the chicken, Gallus gallus, the first species sequenced that is both a model organism and a global food source. Here we present a clone-based physical map of the chicken genome at 20-fold coverage, containing 260 contigs of overlapping clones. This map represents approximately 91% of the chicken genome and enables identification of chicken clones aligned to positions in other sequenced genomes.