Ecological investigation of a suspected spawning site of Colorado squawfish on the Yampa River, Utah

On 5 July 1981, 13 adult Colorado squawfish were found in spawning condition at river mile 16.5 in the Yampa River, a major tributary to the Green River. An investigation was undertaken to quantitatively describe this section of the river to gain insights on the spawning requirements of this endangered species. The substrate at the suspected spawning site was cobble with large interstitial spaces devoid of organics, silts, or clays. It appeared that larvae of several fish species utilized these cobble areas and the associated voids. Diurnal sampling indicated that larval drift occurred between 0100 and 0125 hours. Substrate size also appeared to be a dominant factor in fish distribution. Feeding intensities of these fish corresponded to macroinvertebrate drift.         

Sources of variation in counts of meristic features of Yellowstone cutthroat trout ( Oncorhynchus clarki bouvieri )

We determined variability in counts of meristic features (pyloric caecae, vertebrae, pelvic fin rays, gillrakers, basibranchial teeth, scales above the lateral line, and scales in the lateral series) of Yellowstone cutthroat trout ( Oncorhynchus clarki bouvieri ) by 3 independent readers, by the same reader on 3 different occasions, and among fish from 12 sampling sites within a 650-km 2 watershed. Genetic purity of the cutthroat trout was determined by electrophoretic analysis. Significant differences in meristic counts were observed among 3 readers and among sampling sites, but not among 3 occasions by a single reader. Scale counts were within the reported range for Yellowstone cutthroat trout, but counts of other structures (pyloric caecae, gillrakers, vertebrae) were as similar to rainbow trout as to Yellowstone cutthroat trout. Meristic counts identified the fish as cutthroat trout; however, variation among readers and sampling sites, as well as within the species, limits their use when identifying genetically pure cutthroat trout or assessing possible integration with rainbow trout.     

The growth of mathematical knowledge—Introduction of convex bodies

The article addresses the topic of the growth of mathematical knowledge with a special focus on the question: How are mathematical objects introduced to mathematical practice? It takes as starting point a proposal made in a previous paper which is based on a case study on the introduction of Riemann surfaces. The claim is that (i) a new object first refers to previously accepted objects, and that (ii) reasoning is possible via a correspondence to the objects with reference to which it is introduced. In addition Riemann surfaces are geometrical objects, i.e., they are placed in a geometrical context, which makes new definitions possible. This proposal is tested on a case study on Minkowski’s introduction of convex bodies. The conclusion is that the proposal holds also for this example. In both cases we notice that in a first stage is a close connection between the new object and the objects it is introduced with reference to, and that in a later stage, the new object is given an independent definition. Even though the two cases display similarity in these respects, we also point to certain differences between the cases in the process of the first stage. Overall we notice the fruitfulness of representing problems in different contexts.     

Transiting circumbinary planets Kepler-34 b and Kepler-35 b

Most Sun-like stars in the Galaxy reside in gravitationally bound pairs of stars (binaries). Although long anticipated, the existence of a 'circumbinary planet' orbiting such a pair of normal stars was not definitively established until the discovery of the planet transiting (that is, passing in front of) Kepler-16. Questions remained, however, about the prevalence of circumbinary planets and their range of orbital and physical properties. Here we report two additional transiting circumbinary planets: Kepler-34 (AB)b and Kepler-35 (AB)b, referred to here as Kepler-34 b and Kepler-35 b, respectively. Each is a low-density gas-giant planet on an orbit closely aligned with that of its parent stars. Kepler-34 b orbits two Sun-like stars every 289?days, whereas Kepler-35 b orbits a pair of smaller stars (89% and 81% of the Sun's mass) every 131?days. The planets experience large multi-periodic variations in incident stellar radiation arising from the orbital motion of the stars. The observed rate of circumbinary planets in our sample implies that more than ～1% of close binary stars have giant planets in nearly coplanar orbits, yielding a Galactic population of at least several million.     

Comparison of genome degradation in Paratyphi A and Typhi, human-restricted serovars of Salmonella enterica that cause typhoid

Salmonella enterica serovars often have a broad host range, and some cause both gastrointestinal and systemic disease. But the serovars Paratyphi A and Typhi are restricted to humans and cause only systemic disease. It has been estimated that Typhi arose in the last few thousand years. The sequence and microarray analysis of the Paratyphi A genome indicates that it is similar to the Typhi genome but suggests that it has a more recent evolutionary origin. Both genomes have independently accumulated many pseudogenes among their approximately 4,400 protein coding sequences: 173 in Paratyphi A and approximately 210 in Typhi. The recent convergence of these two similar genomes on a similar phenotype is subtly reflected in their genotypes: only 30 genes are degraded in both serovars. Nevertheless, these 30 genes include three known to be important in gastroenteritis, which does not occur in these serovars, and four for Salmonella-translocated effectors, which are normally secreted into host cells to subvert host functions. Loss of function also occurs by mutation in different genes in the same pathway (e.g., in chemotaxis and in the production of fimbriae).     

A YAC-based physical map of the mouse genome.

A physical map of the mouse genome is an essential tool for both positional cloning and genomic sequencing in this key model system for biomedical research. Indeed, the construction of a mouse physical map with markers spaced at an average interval of 300 kb is one of the stated goals of the Human Genome Project. Here we report the results of a project at the Whitehead Institute/MIT Center for Genome Research to construct such a physical map of the mouse. We built the map by screening sequenced-tagged sites (STSs) against a large-insert yeast artificial chromosome (YAC) library and then integrating the STS-content information with a dense genetic map. The integrated map shows the location of 9,787 loci, providing landmarks with an average spacing of approximately 300 kb and affording YAC coverage of approximately 92% of the mouse genome. We also report the results of a project at the MRC UK Mouse Genome Centre targeted at chromosome X. The project produced a YAC-based map containing 619 loci (with 121 loci in common with the Whitehead map and 498 additional loci), providing especially dense coverage of this sex chromosome. The YAC-based physical map directly facilitates positional cloning of mouse mutations by providing ready access to most of the genome. More generally, use of this map in addition to a newly constructed radiation hybrid (RH) map provides a comprehensive framework for mouse genomic studies.