Sequence homology of the LFA-1 and Mac-1 leukocyte adhesion glycoproteins and unexpected relation to leukocyte interferon

Cell-surface adherence reactions are fundamental to the biology of lymphocytes, monocytes and granulocytes. The lymphocyte function-associated 1 (LFA-1) and macrophage 1 (Mac-1) glycoproteins mediate differing types of adhesion reactions on these cells. LFA-1 participates in T-lymphocyte and natural killer-cell adhesion to target cells, whereas the Mac-1 antigen is identical to the complement receptor type 3, which mediates adhesion of monocytes and granulocytes to C3bi-sensitized particles. Deficiency of these proteins, in a heritable disease, results in multiple adhesion-related leukocyte defects. LFA-1 and Mac-1 resemble one another in overall structure, having alpha-subunits of relative molecular mass (Mr) 180,000 and 170,000, respectively, which are non-covalently associated with beta-subunits of Mr 95,000 in alpha 1 beta 1 complexes. Peptide mapping and immunological cross-reactivity have shown that the beta-subunits are highly related if not identical, but have revealed no similarities between the alpha-subunits. Nonetheless, the shared beta-subunit suggested that LFA-1 and Mac-1 might be members of a protein family containing diversified but evolutionarily related alpha-subunits. Therefore, we examine here the structure of the alpha-subunits by N-terminal amino-acid sequencing. Sequence homology shows that the alpha-subunits are members of a novel leukocyte adhesion protein family, and suggests that their evolution occurred by gene duplication. A search for similarities to previously sequenced proteins reveals a further unexpected homology between LFA-1 and leukocyte (alpha) interferons.     

Altered expression of securin (Pttg1) and serpina3n in the auditory system of hearing-impaired Tff3-deficient mice

Introduction

Tff3 peptide exerts important functions in cytoprotection and restitution of the gastrointestinal (GI) tract epithelia. Moreover, its presence in the rodent inner ear and involvement in the hearing process was demonstrated recently. However, its role in the auditory system still remains elusive. Our previous results showed a deterioration of hearing with age in Tff3-deficient animals.

Results

Present detailed analysis of auditory brain stem response (ABR) measurements and immunohistochemical study of selected functional proteins indicated a normal function and phenotype of the cochlea in Tff3 mutants. However, a microarray-based screening of tissue derived from the auditory central nervous system revealed an alteration of securin (Pttg1) and serpina3n expression between wild-type and Tff3 knock-out animals. This was confirmed by qRT-PCR, immunostaining and western blots.

Conclusions

We found highly down-regulated Pttg1 and up-regulated serpina3n expression as a consequence of genetically deleting Tff3 in mice, indicating a potential role of these factors during the development of presbyacusis.     

南京栖霞山铅锌矿山中的现代钙华:一种高度富锌和锰的方解石

金属硫化物矿山开发引发的重金属污染已成为当前急需解决的环境问题. 以南京栖霞山铅锌矿采矿巷道壁上的现代钙华为研究对象, 利用电子探针、扫描电子显微镜和X射线粉末衍射分析等矿物学手段, 分析了钙华中的矿物组成及其重金属元素的赋存形态和分布状况. 结果表明钙华的主要矿物成分为方解石. 尽管地层水的重金属含量较低, 但是钙华中碳酸盐矿物的微量元素含量却较高, 最高含量分别为: Mn 23.65%, Zn 9.60%, Mg 0.76%, Fe 4.44%和Pb 0.66%. 钙华在电子探针背散射电子像中呈现出复杂的韵律壳层构造, 成分分析表明这种韵律壳层构造与重金属的分布有关. 另外, 在钙华中见有螺旋状及团絮状物质可能表明微生物参与了钙华的形成过程, 并与重金属的富集存在关联. 所报道的高度富锌-锰方解石对矿山环境中的重金属污染治理具有可借鉴意义.     

多机组空调系统部分负荷下的节能策略研究

针对冷水机组大部分时间都是在部分负荷下运行的现状,提出了一种多机组空调系统并联的节能策略．运用模型仿真和试验验证手段研究节能优化运行策略对机组性能改善效果．试验结果表明：当机组由100％负荷降为50％负荷时,机组的冷凝温度由47．2℃下降到42．5℃,蒸发温度由2．2℃上升到3．5℃,COP值提高9．5％．从而表明该节能策略对多机组空调系统在部分负荷下的性能改善具有较大潜力．同时针对试验结果与仿真结果存在的差距,分析了产生的原因并提出了进一步的改进措施．     

Improved Classification for Compositional Data Using the <Emphasis Type="Italic">α</Emphasis>-transformation

In compositional data analysis, an observation is a vector containing nonnegative values, only the relative sizes of which are considered to be of interest. Without loss of generality, a compositional vector can be taken to be a vector of proportions that sum to one. Data of this type arise in many areas including geology, archaeology, biology, economics and political science. In this paper we investigate methods for classification of compositional data. Our approach centers on the idea of using the α-transformation to transform the data and then to classify the transformed data via regularized discriminant analysis and the k-nearest neighbors algorithm. Using the α-transformation generalizes two rival approaches in compositional data analysis, one (when α=1) that treats the data as though they were Euclidean, ignoring the compositional constraint, and another (when α = 0) that employs Aitchison’s centered log-ratio transformation. A numerical study with several real datasets shows that whether using α = 1 or α = 0 gives better classification performance depends on the dataset, and moreover that using an intermediate value of α can sometimes give better performance than using either 1 or 0.     

Recognizing Treelike k-Dissimilarities

A k-dissimilarity D on a finite set X, |X|????k, is a map from the set of size k subsets of X to the real numbers. Such maps naturally arise from edgeweighted trees T with leaf-set X: Given a subset Y of X of size k, D(Y ) is defined to be the total length of the smallest subtree of T with leaf-set Y . In case k?=?2, it is well-known that 2-dissimilarities arising in this way can be characterized by the so-called ??4-point condition??. However, in case k?>?2 Pachter and Speyer (2004) recently posed the following question: Given an arbitrary k-dissimilarity, how do we test whether this map comes from a tree? In this paper, we provide an answer to this question, showing that for k????3 a k-dissimilarity on a set X arises from a tree if and only if its restriction to every 2?k-element subset of X arises from some tree, and that 2?k is the least possible subset size to ensure that this is the case. As a corollary, we show that there exists a polynomial-time algorithm to determine when a k-dissimilarity arises from a tree. We also give a 6-point condition for determining when a 3-dissimilarity arises from a tree, that is similar to the aforementioned 4-point condition.     

Genetic mapping with SNP markers in Drosophila.

Map-based positional cloning of Drosophila melanogaster genes is hampered by both the time-consuming, error-prone nature of traditional methods for genetic mapping and the difficulties in aligning the genetic and cytological maps with the genome sequence. The identification of sequence polymorphisms in the Drosophila genome will make it possible to map mutations directly to the genome sequence with high accuracy and resolution. Here we report the identification of 7,223 single-nucleotide polymorphisms (SNPs) and 1,392 insertions/deletions (InDels) in common laboratory strains of Drosophila. These sequence polymorphisms define a map of 787 autosomal marker loci with a resolution of 114 kb. We have established PCR product-length polymorphism (PLP) or restriction fragment-length polymorphism (RFLP) assays for 215 of these markers. We demonstrate the use of this map by delimiting two mutations to intervals of 169 kb and 307 kb, respectively. Using a local high-density SNP map, we also mapped a third mutation to a resolution of approximately 2 kb, sufficient to localize the mutation within a single gene. These methods should accelerate the rate of positional cloning in Drosophila.     

New bibenzyls of the liverwort,Radula variabilis

Summary 3 new bibenzyls having a 7-membered heterocyclic ring have been isolated from the liverwort,Radula variabilis and their structures have been established to be1, 3 and5.