A genome-wide association study identifies susceptibility loci for Wilms tumor

Wilms tumor is the most common renal malignancy of childhood. To identify common variants that confer susceptibility to Wilms tumor, we conducted a genome-wide association study in 757 individuals with Wilms tumor (cases) and 1,879 controls. We evaluated ten SNPs in regions significantly associated at P < 5 × 10(-5) in two independent replication series from the UK (769 cases and 2,814 controls) and the United States (719 cases and 1,037 controls). We identified clear significant associations at 2p24 (rs3755132, P = 1.03 × 10(-14); rs807624, P = 1.32 × 10(-14)) and 11q14 (rs790356, P = 4.25 × 10(-15)). Both regions contain genes that are plausibly related to Wilms tumorigenesis. We also identified candidate association signals at 5q14, 22q12 and Xp22.     

A C-terminally elongated form of PHI from porcine intestine

A C-terminally elongated form of peptide histidine isoleucine amide (PHI) was isolated from porcine intestine based on its effect on cAMP production in IMR-32 cells. The structure was determined by amino acid sequence analysis of tryptic fragments and by mass spectrometry. The peptide has 42 amino acid residues like those described from human, rat and mouse, but the amino acid sequence of the C-terminal extension of pig PHI is unique. Unlike the other peptides, it has a C-terminal Ala and it differs at five positions from the human form and at six positions from the rat form, while the human and the rat forms differ by only two substitutions. To avoid confusion arising from different C-terminal residues, a unifying nomenclature is proposed: PHI-27 for the hormone and PHI-42 for the elongated product.     

C-18 hydroxy steroids from the Mediterranean gorgonianLeptogorgia sarmentosa

Summary Five new polyoxygenated steroids, 24-methylcholesta-1,4,22E-trien-16, 18,20-triol-3-one (1), cholest-1,4,22E-trien-16, 18,20-triol-3-one (2), 24-methylcholesta-4,22E-dien-16, 18, 20-triol-3-one (3), cholesta-4,22E-dien-16, 18,20-triol-3-one (4) and 27-nor-24-methylcholesta-4,22E-dien-16,18,20-triol-3-one (5), have been found in a marine organism, the gorgonianLeptogorgia sarmentosa.This work has been done with the financial support of Progetto Finalizzato der la Chimica Fine e Secondaria, C.N.R., Roma. The authors are grateful to Zoological Station of Naples for collecting the gorgonian. Thanks are also due to Mr A. Crispino and Mr G. Scognamiglio for their technical assistance.     

Tartessol,a new diterpene fromSideritis grandiflora Salzm

Résumé Un nouveau diterpène tartessol (1) a été isolé de laSideritis grandiflora Salzm. (Labiées) est sa structure est proposée comme étantent-14-acétoxy-15-beyèren-18-ol.

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Part XVIII in the series Studies on diterpenes from genusSideritis. For Part XVII seeT. G. de Quesada, B. Rodríguez andS. Valverde,Phytochemistry, in press.

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The authors thank Dr.J. Borja, Botany Department, Faculty of Pharmacy, Madrid, for the collection and botanical classification of the plant material and Dr.Juana Bellanato, Institute of Optics, C.S.I.C., Madrid, for the high resolution IR spectra.     

Metabolism in porifera VI. Role of the 5,6 double bond and the fate of the C-4 of cholesterol during the conversion into 3β-hydroxymethyl-A-nor-5α-steranes in the spongeAxinella verrucosa

Summary During the conversion of cholesterol into 3 -hydroxymethyl-A-nor-5-cholestane by the spongeAxinella verrucosa, the carbon-3 of this latter originate from carbon-4 of cholesterol. Cholestanol moreover does not seem an intermediate in this conversion.     

Hotspots of aberrant epigenomic reprogramming in human induced pluripotent stem cells

Induced pluripotent stem cells (iPSCs) offer immense potential for regenerative medicine and studies of disease and development. Somatic cell reprogramming involves epigenomic reconfiguration, conferring iPSCs with characteristics similar to embryonic stem (ES) cells. However, it remains unknown how complete the reestablishment of ES-cell-like DNA methylation patterns is throughout the genome. Here we report the first whole-genome profiles of DNA methylation at single-base resolution in five human iPSC lines, along with methylomes of ES cells, somatic cells, and differentiated iPSCs and ES cells. iPSCs show significant reprogramming variability, including somatic memory and aberrant reprogramming of DNA methylation. iPSCs share megabase-scale differentially methylated regions proximal to centromeres and telomeres that display incomplete reprogramming of non-CG methylation, and differences in CG methylation and histone modifications. Lastly, differentiation of iPSCs into trophoblast cells revealed that errors in reprogramming CG methylation are transmitted at a high frequency, providing an iPSC reprogramming signature that is maintained after differentiation.