Effect of natural iron fertilization on carbon sequestration in the Southern Ocean

The availability of iron limits primary productivity and the associated uptake of carbon over large areas of the ocean. Iron thus plays an important role in the carbon cycle, and changes in its supply to the surface ocean may have had a significant effect on atmospheric carbon dioxide concentrations over glacial-interglacial cycles. To date, the role of iron in carbon cycling has largely been assessed using short-term iron-addition experiments. It is difficult, however, to reliably assess the magnitude of carbon export to the ocean interior using such methods, and the short observational periods preclude extrapolation of the results to longer timescales. Here we report observations of a phytoplankton bloom induced by natural iron fertilization--an approach that offers the opportunity to overcome some of the limitations of short-term experiments. We found that a large phytoplankton bloom over the Kerguelen plateau in the Southern Ocean was sustained by the supply of iron and major nutrients to surface waters from iron-rich deep water below. The efficiency of fertilization, defined as the ratio of the carbon export to the amount of iron supplied, was at least ten times higher than previous estimates from short-term blooms induced by iron-addition experiments. This result sheds new light on the effect of long-term fertilization by iron and macronutrients on carbon sequestration, suggesting that changes in iron supply from below--as invoked in some palaeoclimatic and future climate change scenarios--may have a more significant effect on atmospheric carbon dioxide concentrations than previously thought.     

Water vapour in the atmosphere of a transiting extrasolar planet

Water is predicted to be among the most abundant (if not the most abundant) molecular species after hydrogen in the atmospheres of close-in extrasolar giant planets ('hot Jupiters'). Several attempts have been made to detect water on such planets, but have either failed to find compelling evidence for it or led to claims that should be taken with caution. Here we report an analysis of recent observations of the hot Jupiter HD 189733b (ref. 6) taken during the transit, when the planet passed in front of its parent star. We find that absorption by water vapour is the most likely cause of the wavelength-dependent variations in the effective radius of the planet at the infrared wavelengths 3.6 mum, 5.8 mum (both ref. 7) and 8 mum (ref. 8). The larger effective radius observed at visible wavelengths may arise from either stellar variability or the presence of clouds/hazes. We explain the report of a non-detection of water on HD 189733b (ref. 4) as being a consequence of the nearly isothermal vertical profile of the planet's atmosphere.     

Effects of wildfire and postfire floods on stonefly detritivores of the Pajarito Plateau, New Mexico

Wildfires alter the quantity and quality of allochthonous detritus in streams by burning riparian vegetation and through flushing during postfire floods. As such, fire disturbance may negatively affect detritivorous insects that consume coarse organic matter. We assessed how 2 crown fires impacted stonefly detritivores in streams of the Pajarito Plateau, New Mexico. We documented stonefly populations before and after the fires and postfire floods, and compared recovery trajectories among unburned, lightly burned, and severely burned reaches. We also conducted experiments to assess burned detritus as a food resource for Pteronarcella badia Hagen. Specifically, we characterized microbial conditioning, nutrient content, and breakdown rates of burned and unburned deciduous leaves and pine needles. We compared colonization of P. badia in field-placed leaf packs and growth of P. badia in a microcosm experiment on burned and unburned treatments. Detritivorous stoneflies in Plateau streams survived wildfire, but were extirpated from burned reaches after severe postfire floods in both Capulin and Guaje canyon. In Guaje Canyon, Amphinemura banksi Baumann and Gaufin was more resilient to flood disturbance than P. badia and recolonized soon after floods abated, whereas recolonization of A. banksi was delayed in Capulin Canyon. Experiments revealed that detritus quality did not explain slow recovery; despite reduced microbial conditioning and decomposition rates, P. badia colonized and grew well on burned detritus. Instead, postfire floods removed shredder stoneflies and their detrital resources; and traits such as body size, voltinism, and dispersal likely interacted with the postfire landscape to shape recovery trajectories in burned streams. Los incendios cambian la cantidad y calidad de la materia orgánica alóctona en los ríos mediante la quema de la vegetación ribereña; además, las inundaciones después de los incendios se llevan materia orgánica río abajo. Como tal, la perturbación por incendio puede afectar negativamente a los insectos detritívoros que consumen la materia orgánica gruesa. Evaluamos cómo 2 fuegos de copas afectaron a los plecópteros detritívoros en arroyos del Altiplano Pajarito, NM. Documentamos las poblaciones de plecópteros antes y después de los incendios e inundaciones y comparamos las trayectorias de recuperación entre áreas no quemadas, levemente quemadas y gravemente quemadas. También llevamos a cabo experimentos para evaluar los detritos quemado como fuente alimenticia para Pteronarcella badia Hagen. Específicamente, caracterizamos el acondicionamiento microbiano, el contenido de nutrientes y las tasas de descomposición de hojas caducifolias y hojas de pino quemadas y no quemadas. Comparamos la colonización de P. badia en paquetes de hojas colocadas en el campo, y su crecimiento en un experimento de microcosmos, en detrito quemado y no quemado. Los plecópteros detritívoros en los arroyos del Altiplano sobrevivieron a los incendios pero fueron extirpados de las áreas quemadas después de inundaciones severas que siguieron a incendios en los cañones Capulin y Guaje. En Guaje, Amphinemura banksi Baumann y Gaufin fue más resistente a la perturbación por inundación que P. badia y recolonizó poco después de que la inundación cedió, mientras que la recolonización de A. banksi tardó más en Capulin. Los experimentos revelaron que la calidad de los detritos no explican esta lenta recuperación; a pesar del menor acondicionamiento microbiano y las tasas de descomposición más bajas, P. badia colonizó y creció bien en detritos quemados. Es probable que las inundaciones después de los incendios se hayan llevado a los plecópteros y a los detritos que consumen, y que los rasgos tales como el tamaño del cuerpo, el voltinismo, y la dispersión hayan interactuado con el paisaje después del incendio para determinar las trayectorias de recuperación en arroyos quemados.     

Galactose transfer and UDP-Galactose hydrolysis in urine from normal balb/c and Balb/c YC8 mice

Summary By chromatographic method we have shown the existence of a complex system for galactose transfer from UDP-galactose and for nucleotide hydrolysis in urines from Balb/c YC8 and normal Balb/c mice. By action of sera from normal and ascitic mice as source of enzyme, we have been able to detect transfer for galactose in urines from ascitic mice and an important inhibitory effect of the nucleotide sugar hydrolysis by the sera with urines from normal mice.     

Genome-scale approaches to resolving incongruence in molecular phylogenies

One of the most pervasive challenges in molecular phylogenetics is the incongruence between phylogenies obtained using different data sets, such as individual genes. To systematically investigate the degree of incongruence, and potential methods for resolving it, we screened the genome sequences of eight yeast species and selected 106 widely distributed orthologous genes for phylogenetic analyses, singly and by concatenation. Our results suggest that data sets consisting of single or a small number of concatenated genes have a significant probability of supporting conflicting topologies. By contrast, analyses of the entire data set of concatenated genes yielded a single, fully resolved species tree with maximum support. Comparable results were obtained with a concatenation of a minimum of 20 genes; substantially more genes than commonly used but a small fraction of any genome. These results have important implications for resolving branches of the tree of life.     

DNA sequence and analysis of human chromosome 18

Chromosome 18 appears to have the lowest gene density of any human chromosome and is one of only three chromosomes for which trisomic individuals survive to term. There are also a number of genetic disorders stemming from chromosome 18 trisomy and aneuploidy. Here we report the finished sequence and gene annotation of human chromosome 18, which will allow a better understanding of the normal and disease biology of this chromosome. Despite the low density of protein-coding genes on chromosome 18, we find that the proportion of non-protein-coding sequences evolutionarily conserved among mammals is close to the genome-wide average. Extending this analysis to the entire human genome, we find that the density of conserved non-protein-coding sequences is largely uncorrelated with gene density. This has important implications for the nature and roles of non-protein-coding sequence elements.