Stream channel and vegetation changes in sections of McKnight Creek, New Mexico

Measurements taken at three-year intervals between 1977 and 1985 of channel morphology and vegetation cover between sections inside and outside a cattle exclosure showed that channels increased in depth and width on all plots. Tree canopy cover decreased significantly between 1977 and 1985, but changes in density of trees and shrubs and herbaceous cover were small. Exclusion of cattle use did not prevent channel erosion or deterioration of vegetation; rather, changes were attributed to a wildfire in the headwaters and subsequent storm events that temporarily upset the dynamic equilibrium of the stream.     

Clones identification of Sequoia sempervirens (D. Don) Endl. in Chile by using PCR-RAPDs technique

A protocol of polymerase chain reaction-random amplified polymorphic DNAs (PCR-RAPDs) was established to analyse the gene diversity and genotype identification for clones of Sequoia sempervirens (D. Don) Endl. in Chile. Ten (out of 34) clones from introduction trial located in Voipir-Villarrica, Chile, were studied. The PCR-RAPDs technique and a modified hexadecyltrimethylammonium bromide (CTAB) protocol were used for genomic DNA extraction. The PCR tests were carried out employing 10-mer random primers. The amplification products were detected by electrophoresis in agarose gels. Forty nine polymorphic bands were obtained with the selected primers (BG04, BF07, BF12, BF13, and BF14) and were ordered according to their molecular size. The genetic similarity between samples was calculated by the Jaccard index and a dendrogram was constructed using a cluster analysis of unweighted pair group method using arithmetic averages (UPGMA). Of the primers tested, 5 (out of 60) RAPD primers were selected for their reproducibility and high polymorphism. A total of 49 polymorphic RAPD bands were detected out of 252 bands. The genetic similarity analysis demonstrates an extensive genetic variability between the tested clones and the dendrogram depicts the genetic relationships among the clones, suggesting a geographic relationship. The results indicate that the RAPD markers permitted the identification of the assayed clones, although they are derived from the same geographic origin.     

Reactive oxygen species produced by NADPH oxidase regulate plant cell growth

Cell expansion is a central process in plant morphogenesis, and the elongation of roots and root hairs is essential for uptake of minerals and water from the soil. Ca2+ influx from the extracellular store is required for (and sets the rates of) cell elongation in roots. Arabidopsis thaliana rhd2 mutants are defective in Ca2+ uptake and consequently cell expansion is compromised--rhd2 mutants have short root hairs and stunted roots. To determine the regulation of Ca2+ acquisition in growing root cells we show here that RHD2 is an NADPH oxidase, a protein that transfers electrons from NADPH to an electron acceptor leading to the formation of reactive oxygen species (ROS). We show that ROS accumulate in growing wild-type (WT) root hairs but their levels are markedly decreased in rhd2 mutants. Blocking the activity of the NADPH oxidase with diphenylene iodonium (DPI) inhibits ROS formation and phenocopies Rhd2-. Treatment of rhd2 roots with ROS partly suppresses the mutant phenotype and stimulates the activity of plasma membrane hyperpolarization-activated Ca2+ channels, the predominant root Ca2+ acquisition system. This indicates that NADPH oxidases control development by making ROS that regulate plant cell expansion through the activation of Ca2+ channels.     

Breeding in the gray-headed tody-flycatcher (Aves: Tyrannidae) with comments on geographical variation in reproductive traits within the genus Todirostrum

The gray-headed tody-flycatcher Todirostrum poliocephalum is a passerine endemic to the Atlantic Forest of Brazil. We describe the nest and nesting behaviour of this species and investigate geographical variation in breeding traits in the genus using data from the literature, museum collections, and citizen science projects. We located 21 nests of the gray-headed tody-flycatcher, 13 of which we monitored. Nest height above the ground averaged 3.3 ± 3.4 m (n = 21). Nests were built over a 16.8 ± 5.6-day period (n = 6) by both adults. Clutch sizes ranged from two to three eggs, with a mean of 2.9 ± 0.3 eggs (n = 10). Eggs measured 16.6 ± 0.5 × 12.0 ± 0.5 mm (n = 23) and weighed 1.1 ± 0.1 g (n = 19). Mean incubation period was 17 days (n = 3) and mean nestling period was 15.5 days (n = 2). Apparent reproductive success was 30.8%, with predation being the primary cause of nest failure (46.1%). Mayfield’s reproductive success was 25.9%, and daily survival rates for eggs and nestlings were 0.957 and 0.971, respectively. Clutch sizes increased with latitude, but temperature and precipitation seasonality had very low importance in explaining clutch size variation.     

Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease

Several risk factors for Crohn's disease have been identified in recent genome-wide association studies. To advance gene discovery further, we combined data from three studies on Crohn's disease (a total of 3,230 cases and 4,829 controls) and carried out replication in 3,664 independent cases with a mixture of population-based and family-based controls. The results strongly confirm 11 previously reported loci and provide genome-wide significant evidence for 21 additional loci, including the regions containing STAT3, JAK2, ICOSLG, CDKAL1 and ITLN1. The expanded molecular understanding of the basis of this disease offers promise for informed therapeutic development.