A phosphatase complex that dephosphorylates gammaH2AX regulates DNA damage checkpoint recovery

One of the earliest marks of a double-strand break (DSB) in eukaryotes is serine phosphorylation of the histone variant H2AX at the carboxy-terminal SQE motif to create gammaH2AX-containing nucleosomes. Budding-yeast histone H2A is phosphorylated in a similar manner by the checkpoint kinases Tel1 and Mec1 (ref. 2; orthologous to mammalian ATM and ATR, respectively) over a 50-kilobase region surrounding the DSB. This modification is important for recruiting numerous DSB-recognition and repair factors to the break site, including DNA damage checkpoint proteins, chromatin remodellers and cohesins. Multiple mechanisms for eliminating gammaH2AX as DNA repair completes are possible, including removal by histone exchange followed potentially by degradation, or, alternatively, dephosphorylation. Here we describe a three-protein complex (HTP-C, for histone H2A phosphatase complex) containing the phosphatase Pph3 that regulates the phosphorylation status of gammaH2AX in vivo and efficiently dephosphorylates gammaH2AX in vitro. gammaH2AX is lost from chromatin surrounding a DSB independently of the HTP-C, indicating that the phosphatase targets gammaH2AX after its displacement from DNA. The dephosphorylation of gammaH2AX by the HTP-C is necessary for efficient recovery from the DNA damage checkpoint.     

A keratin cytoskeletal protein regulates protein synthesis and epithelial cell growth

Cell growth, an increase in mass and size, is a highly regulated cellular event. The Akt/mTOR (mammalian target of rapamycin) signalling pathway has a central role in the control of protein synthesis and thus the growth of cells, tissues and organisms. A striking example of a physiological context requiring rapid cell growth is tissue repair in response to injury. Here we show that keratin 17, an intermediate filament protein rapidly induced in wounded stratified epithelia, regulates cell growth through binding to the adaptor protein 14-3-3sigma. Mouse skin keratinocytes lacking keratin 17 (ref. 4) show depressed protein translation and are of smaller size, correlating with decreased Akt/mTOR signalling activity. Other signalling kinases have normal activity, pointing to the specificity of this defect. Two amino acid residues located in the amino-terminal head domain of keratin 17 are required for the serum-dependent relocalization of 14-3-3sigma from the nucleus to the cytoplasm, and for the concomitant stimulation of mTOR activity and cell growth. These findings reveal a new and unexpected role for the intermediate filament cytoskeleton in influencing cell growth and size by regulating protein synthesis.     

Breeding preferences in the treefrogs Dryophytes japonicus (Hylidae) in Mongolia

ABSTRACT

When a species occurs over a broad range of climates and landscapes, the breeding ecology of that species is expected to vary locally. Additionally, a basic knowledge of breeding ecology is required before other types of studies may be conducted, such as physiology or conservation. In North East Asia, Dryophytes japonicus is distributed from Japan to Mongolia, where its breeding ecology is unknown. The objectives of this study were to understand the breeding requirements of D. japonicus in this part of its range. We collected data for Dryophytes japonicus at 56 sites located within 23 independent localities in Northern Mongolia during the breeding season 2017. The data collected included habitat type and co-occurring amphibian, fishes and bird species. Our results show that the species prefers circa 70 m long oxbow lakes for breeding, while habitat characteristics, water quality and co-occurring species were not significantly associated with the occurrence of the species. We therefore conclude that D. japonicus is behaviourally plastic in Mongolia, as it is in other portions of its range, and that the species can use several types of environments and co-occur with different species at its breeding sites. Corvus dauuricus was the only bird species significant predicting the occurrence of D. japonicus, likely because of overlapping ecological preferences.     

Fabrication and characterization of 3D scaffold using 3D plotting system

In this paper, we design and fabricate a 3D scaffold using rapid prototyping (RP) technology for tissue engineering. The scaffold should have a three-dimensional interconnected pore network. We fabricate a polycaprolactone (PCL) scaffold with interconnecting pores and uniform porosity for cell ingrowth using a 3D plotting system. In order to keep the three dimensional shape under mechanical loading while implanted, we design an oscillating nozzle system to increase elastic modulus and yield strength of PCL ...     

MCHOKeM algorithm with assured bandwidth allocation in DiffServ networks

An active queue management (AQM) algorithm called MCHOKeM is presented, which is borrowed from CHOKeW that draws multi-packets at random from the buffer, the multi-packets are compared with an arriving packet and abandoned if they are from the same flow. But MCHOKeM uses multiple virtual queues for different priority packets and enhances the drawing function by adjusting the maximum number of draws based on the current status of virtual queue length. The number of parameters that MCHOKeM needs to maintain is determined by the number of priority levels being supported by the router, which usually has a small limited value. In order to explain the features of MCHOKeM, an analytical model is used. A series of simulation tests to evaluate the performance are given.     

利用杀菌剂防治松萎蔫病

松萎蔫病是一种非常复杂的病害。据报道,松材线虫(Bursaphelenchus xylophilus)及其携带的细菌诱导了该病,但是对于细菌的的作用尚存争议。笔者筛选出杀细菌剂进行了温室和林间防治松萎蔫病的实验。利用每株3年生赤松(Pinus densiflora)注射3 mg的恶喹酸,松萎蔫病防效达到71 %。利用恶喹酸或阿维菌素及两者混合物对大约20年生赤松的试验表明,3种处理均显示了很高的防效。以上结果证明伴生细菌是诱导松萎蔫病的必要因素,对松萎蔫病可利用杀细菌剂或杀细菌剂与杀线剂混合物进行防控。     

An Approach to Share Architectural Drawing Information and Document Information for Automated Code Checking System

The purpose of this study is to suggest a way of optimized managing and sharing information between standard architectural drawings and construction documents in Korea architectural industry for automated code checking system by linked STEP and XML. To archive this purpose, the authors have analyzed current research and technical development for STEP and XML link and developed a prototype system for sharing information between model based drawings and XML based construction documents. Finally, the authors have suggested practical use scenario of sharing information through linked STEP and XML using test case of automatic code checking. In the paper, the possibility of constructing integrated architectural computing environment through exchange and sharing of drawing information and external data for the whole building life-cycle, from the conceptual design stage to the construction and maintenance stage has been examined. Automated code checking through linked STEP and XML could be enhanced through col-laboration business, more completed code, improved building performance, and reduced construction costs.     

A DNA sequence alignment algorithm using quality information and a fuzzy inference method

DNA sequence alignment algorithms in computational molecular biology have been improved by diverse methods. In this paper, we propose a DNA sequence alignment that uses quality information and a fuzzy inference method developed based on characteristics of DNA fragments and a fuzzy logic system in order to improve conventional DNA sequence alignment methods that uses DNA sequence quality information. In conventional algorithms, DNA sequence alignment scores are calculated by the global sequence alignment algorithm proposed by Needleman-Wunsch, which is established by using quality information of each DNA fragment. However, there may be errors in the process of calculating DNA sequence alignment scores when the quality of DNA fragment tips is low, because only overall DNA sequence quality information are used. In our proposed method, an exact DNA sequence alignment can be achieved in spite of low quality of DNA fragment tips by improvement of conventional algorithms using quality information. Mapping score parameters used to calculate DNA sequence alignment scores are dynamically adjusted by the fuzzy logic system utilizing lengths of DNA fragments and frequencies of low quality DNA bases in the fragments. From the experiments by applying real genome data of National Center for Biotechnology Information, we could see that the proposed method is more efficient than conventional algorithms.