Recovery of Gambel oak after fire in central Utah

The height of oak ( Quercus gambelii Nutt.) stems was measured on several fire scars within the Uinta National Forest and vicinity and compared with the height of oak stems on adjacent, nonburned areas. A significant relationship exists between the recovery rate of oak after fire and elevation, with the recovery rate being greatest at low elevations. A trend also exists showing that recovery tends to be greater on south to westerly exposures than on north to easterly exposures.     

Ecological comparison of sympatric populations of sand lizards ( Cophosaurus texanus and Callisaurus draconoides )

Sympatric populations of Cophosaurus texanus and Callisaurus draconoides were periodically sampled from March 1973 through April 1974 at Burro Creek, Mohave County, Arizona. Callisaurus were also sampled at Rock Valley, Nye County, Nevada. Sex ratios were skewed in favor of males in the adult Cophosaurus but were equal in both adult populations of Callisaurus. Both species became sexually mature as yearlings. Mean clutch sizes were 3.55 (±0.83) for Cophosaurus, and 4.25 (±1.08) and 5.07 (±1.33) for Callisaurus at Burro Creek and Rock Valley respectively. Evidence of multiple clutches was exhibited by both species. Egg weight/body weight ratios for both species and clutch weight/body weight ratios for Cophosaurus were notably smaller than previously reported. At Burro Creek both species were highly insectivorus, with orthopterans comprising the largest food group of each. Niche overlap for food was high at the ordinal level, but at the familial level it is apparent that Callisaurus probably fed in the more xeric areas of the riparian habitat. No differences were found in the temperature responses of these two lizards. However, minor temporal separations and substantial spatial partitioning were observed. Callisaurus preferred sandy open areas, while Cophosaurus preferred the presence of some rocks and boulders.     

Influence of prey movement on the aim of predatory strikes of the western rattlesnake ( Crotalus Viridis )

The purpose of this study was to determine whether the western rattlesnake ( Crotalus viridis ) aims its predatory strike at the head/thorax region of mice primarily on the basis of cues related to the direction of prey movement. We hypothesized that when rattlesnakes strike at anesthetized, backward-moving mice, most strikes would be aimed at the forward-most-moving region, i.e., the posterior (abdomen/tail) region of prey. However, most mice were struck in the anterior (head/thorax) region, implying that the visual-infrared image of mice, rather than directional movement, guides the aim of predatory strikes.     

Mechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex.

The activation of ubiquitin and related protein modifiers is catalysed by members of the E1 enzyme family that use ATP for the covalent self-attachment of the modifiers to a conserved cysteine. The Escherichia coli proteins MoeB and MoaD are involved in molybdenum cofactor (Moco) biosynthesis, an evolutionarily conserved pathway. The MoeB- and E1-catalysed reactions are mechanistically similar, and despite a lack of sequence similarity, MoaD and ubiquitin display the same fold including a conserved carboxy-terminal Gly-Gly motif. Similar to the E1 enzymes, MoeB activates the C terminus of MoaD to form an acyl-adenylate. Subsequently, a sulphurtransferase converts the MoaD acyl-adenylate to a thiocarboxylate that acts as the sulphur donor during Moco biosynthesis. These findings suggest that ubiquitin and E1 are derived from two ancestral genes closely related to moaD and moeB. Here we present the crystal structures of the MoeB-MoaD complex in its apo, ATP-bound, and MoaD-adenylate forms, and highlight the functional similarities between the MoeB- and E1-substrate complexes. These structures provide a molecular framework for understanding the activation of ubiquitin, Rub, SUMO and the sulphur incorporation step during Moco and thiamine biosynthesis.     

Reproductive pair correlations and the clustering of organisms.

Clustering of organisms can be a consequence of social behaviour, or of the response of individuals to chemical and physical cues. Environmental variability can also cause clustering: for example, marine turbulence transports plankton and produces chlorophyll concentration patterns in the upper ocean. Even in a homogeneous environment, nonlinear interactions between species can result in spontaneous pattern formation. Here we show that a population of independent, random-walking organisms ('brownian bugs'), reproducing by binary division and dying at constant rates, spontaneously aggregates. Using an individual-based model, we show that clusters form out of spatially homogeneous initial conditions without environmental variability, predator-prey interactions, kinesis or taxis. The clustering mechanism is reproductively driven-birth must always be adjacent to a living organism. This clustering can overwhelm diffusion and create non-poissonian correlations between pairs (parent and offspring) or organisms, leading to the emergence of patterns.     

Stable transmission of reversible modifications: maintenance of epigenetic information through the cell cycle

Even though every cell in a multicellular organism contains the same genes, the differing spatiotemporal expression of these genes determines the eventual phenotype of a cell. This means that each cell type contains a specific epigenetic program that needs to be replicated through cell divisions, along with the genome, in order to maintain cell identity. The stable inheritance of these programs throughout the cell cycle relies on several epigenetic mechanisms. In this review, DNA methylation and histone methylation by specific histone lysine methyltransferases (KMT) and the Polycomb/Trithorax proteins are considered as the primary mediators of epigenetic inheritance. In addition, non-coding RNAs and nuclear organization are implicated in the stable transfer of epigenetic information. Although most epigenetic modifications are reversible in nature, they can be stably maintained by self-recruitment of modifying protein complexes or maintenance of these complexes or structures through the cell cycle.     

Identification of a bacterial inhibitor against g-type lysozyme

Lysozymes are antibacterial effectors of the innate immune system in animals that hydrolyze peptidoglycan. Bacteria have evolved protective mechanisms that contribute to lysozyme tolerance such as the production of lysozyme inhibitors, but only inhibitors of chicken (c-) and invertebrate (i-) type lysozyme have been identified. We here report the discovery of a novel Escherichia coli inhibitor specific for goose (g-) type lysozymes, which we designate PliG (periplasmic lysozyme inhibitor of g-type lysozyme). Although it does not inhibit c- or i-type lysozymes, PliG shares a structural sequence motif with the previously described PliI and MliC/PliC lysozyme inhibitor families, suggesting a common ancestry and mode of action. Deletion of pliG increased the sensitivity of E. coli to g-type lysozyme. The existence of inhibitors against all major types of animal lysozyme and their contribution to lysozyme tolerance suggest that lysozyme inhibitors may play a role in bacterial interactions with animal hosts.