Gut microbiota composition correlates with diet and health in the elderly

Alterations in intestinal microbiota composition are associated with several chronic conditions, including obesity and inflammatory diseases. The microbiota of older people displays greater inter-individual variation than that of younger adults. Here we show that the faecal microbiota composition from 178 elderly subjects formed groups, correlating with residence location in the community, day-hospital, rehabilitation or in long-term residential care. However, clustering of subjects by diet separated them by the same residence location and microbiota groupings. The separation of microbiota composition significantly correlated with measures of frailty, co-morbidity, nutritional status, markers of inflammation and with metabolites in faecal water. The individual microbiota of people in long-stay care was significantly less diverse than that of community dwellers. Loss of community-associated microbiota correlated with increased frailty. Collectively, the data support a relationship between diet, microbiota and health status, and indicate a role for diet-driven microbiota alterations in varying rates of health decline upon ageing.     

Melanoma genome sequencing reveals frequent PREX2 mutations

Melanoma is notable for its metastatic propensity, lethality in the advanced setting and association with ultraviolet exposure early in life. To obtain a comprehensive genomic view of melanoma in humans, we sequenced the genomes of 25 metastatic melanomas and matched germline DNA. A wide range of point mutation rates was observed: lowest in melanomas whose primaries arose on non-ultraviolet-exposed hairless skin of the extremities (3 and 14 per megabase (Mb) of genome), intermediate in those originating from hair-bearing skin of the trunk (5-55 per Mb), and highest in a patient with a documented history of chronic sun exposure (111 per Mb). Analysis of whole-genome sequence data identified PREX2 (phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2)--a PTEN-interacting protein and negative regulator of PTEN in breast cancer--as a significantly mutated gene with a mutation frequency of approximately 14% in an independent extension cohort of 107 human melanomas. PREX2 mutations are biologically relevant, as ectopic expression of mutant PREX2 accelerated tumour formation of immortalized human melanocytes in vivo. Thus, whole-genome sequencing of human melanoma tumours revealed genomic evidence of ultraviolet pathogenesis and discovered a new recurrently mutated gene in melanoma.     

Understanding beyond grasping propositions: A discussion of chess and fish

In this paper, we argue that, contra Strevens (2013), understanding in the sciences is sometimes partially constituted by the possession of abilities; hence, it is not (in such cases) exhausted by the understander's bearing a particular psychological or epistemic relationship to some set of structured propositions. Specifically, the case will be made that one does not really understand why a modeled phenomenon occurred unless one has the ability to actually work through (meaning run and grasp at each step) a model simulation of the underlying dynamic.     

Second nesting record and northward advance of the Great-tailed Grackle ( Quiscalus mexicanus ) in Nevada

The second nesting record for the Great - tailed Grackle ( Quiscalus mexicanus ) in Nevada is reported from the central part of the state approximately 240 km north of the previous record. Since 1912 this species has undergone a dramatic northward extension of its previous range in the United States, presumably as a result of increased agricultural irrigation in areas that were previously desert or short - grass prairie.         

Home range and seasonal movements of Columbian Sharp-tailed Grouse associated with Conservation Reserve Program and mine reclamation

During 1999 and 2000 we trapped and radio-marked 156 Columbian Sharp-tailed Grouse ( Tympanuchus phasianellus columbianus ) on leks in Conservation Reserve Program (CRP, n = 73) and mine reclamation (MR, n = 83) lands in northwestern Colorado. Median spring--fall home range sizes using the 95% fixed kernal and minimum convex polygon estimators for 54 grouse were 86 ha and 61 ha, respectively. Median fixed kernal home range size did not differ between males (79 ha) and females (87 ha). Home ranges of grouse associated with CRP (112 ha) were larger than those of grouse in MR (75 ha). Directional orientation of movements from leks of capture to wintering areas was nonrandom, and there was a positive elevation gain (median = 102 m) associated with these movements. Movements did not differ between grouse captured in CRP and MR for any season but did differ between genders for the spring--fall period. Males exhibited stronger fidelity and less variation in their movements than females; 96% of males compared with only 77% of females remained within 2.0 km of their lek of capture from spring through fall. Ninety percent of females nested within 2.5 km of their lek of capture. During winter all grouse were found farther (median = 21.5 km) from lek sites than in any other season. Males remained on the breeding range longer in the fall and returned earlier in the spring than females even though they wintered similar distances away (median males = 21.5 km, median females = 21.4 km). Our findings support the 2.0-km radius used in the Habitat Suitability Index model for Columbian Sharptailed Grouse to assess nest and brood-rearing cover around leks, but not the 6.5-km radius used to evaluate winter cover.     

Bird use of riparian vegetation along the Truckee River, Califonia and Nevada

The Truckee River in California and Nevada is subject to diverse water regimes and a corresponding variety of flow rates. Original riparian vegetation has been altered by these variable flow rates and by a variety of human uses resulting in loss of native riparian vegetation from its historic extent. We conducted bird surveys along the Truckee River during spring 193 to (1) determine relationships between birds and the present vegetation; (2) determine the importance of different vegetation types to sensitive bird species that have declined recently in the western United States due to competition from exotic plant species, cowbird ( Molothrus ater ) parasitism, reduction in nesting habitat, or other unidentified reasons; and (3) establish a monitoring program and collect baseline data for future comparisons. The most frequently detected bird species throughout the study was the Brown-headed Cowbird. The greatest number of bird species (98 of 116) was found in the native mixed willow ( Salix spp.) riparian scrub vegetation type. We recommend protecting the remaining native riparian vegetation types for bird habitat along the Truckee River.     

Managing a complex exotic vegetation program in Yellowstone National Park

The number of documented exotic plants in Yellowstone National Park has increased from 85 known in 1986 to over 185 today. Exotic plants are substantially impacting the parks natural and cultural resources and are a high management priority. We have adopted an integrated weed management approach with regard to exotic vegetation, emphasizing prevention, education, early detection and eradication, control, and, to a lesser degree, monitoring. The program involves over 140 staff with program expenditures averaging approximately $190,000 annually. Prevention actions include requiring approved gravel on construction projects; banning hay in the backcountry and allowing transport of only certified weed-seed-free hay through Yellowstone; requiring construction equipment to be pressurecleaned prior to entering the park; and native species revegetation after road, housing, and other construction projects have disturbed ground. Over 4500 acres, primarily along roadsides and in developed areas, are surveyed annually in early detection efforts with emphasis placed on eradicating small, new infestations of highly invasive species such as sulfur cinquefoil ( Potentilla recta L.) and leafy spurge ( Euphorbia esula L.). Control efforts focus on about 30 priority species, such as spotted knapweed ( Centaurea maculosa Lam.), oxeye daisy ( Chrysanthemum leucanthemum L.), and hoary cress ( Cardaria draba [L.] Desv.) using chemical, mechanical, and cultural techniques. A total of 2027 acres were treated during 1998, whereas control efforts for 12 species occurred on 2596 acres during the previous 3-year period, 1995-1997. Strong and expanding partnerships with other federal, state, and local agencies and private companies contribute to management efforts within the park. Future program goals emphasize increases in base funding to ensure continued weed management efforts as well as expanding survey, monitoring, and reclamation efforts. Ultimately, a more rigorous assessment of program effectiveness is desired.