Fishtail Mesa: a vegetation resurvey of relict area in Grand Canyon National Park, Arizona

Relict sites are geographically isolated areas that are undisturbed by direct and indirect human influences. These sites facilitate long-term ecological monitoring by providing a reference for gauging impacts occurring elsewhere. Knowledge gained through comparing vegetation change on matched relict and proximal disturbed areas can help partition the causes of change into natural and human-produced components. Fishtail Mesa in Grand Canyon National Park is a 439-ha relict site that is inaccessible to domestic livestock. Human visitation is infrequent and irregular, and fires have never been suppressed or managed. In 1958, U.S. Forest Service range scientists conducted a survey of Fishtail Mesa to gather reference data on vegetation, wildlife, and soils. Vegetation sampling was conducted using a method called the ";";elb.";"; We returned to Fishtail Mesa in May 1996 to perform a general vegetation and floristic survey, assess the extent of vegetation change after 38 years, and evaluate the suitability of the site as a location for long-term surveillance of ecological change. Fishtail Mesas vegetation consists primarily of a Pinus edulis (pinyon) and Juniperus osteosperma (Utah juniper) woodland with an Artemisia tridentata (sagebrush) understory, or tree-type (310.9 ha), and an Artemisia and Poa fendleriana (mutton grass) steppe, or shrub-type (127.5 ha). Since 1958 vegetation changes in both shrub- and tree-types have been limited to only a few species. In the shrub-type we detected slight increases from 1958 to 1996 in both Pinus and Juniperus , and reexamination of 1958 photo sites confirmed that Pinus and Juniperus are reoccupying the shrub-type. Artemisia cover declined from 1958 to 1996, whereas Poa increased from near trace amounts in 1958 to moderate cover in 1996. In the tree-type, Poa has increased from 1958 to 1996, while Artemisia , Juniperus , and Pinus showed no apparent change. Other species such as Ephedra torreyana (Torrey joint-fir), Opuntia polyacantha (prickly pear), and Gutierrezia sarothrae (snakeweed) have decreased. Vegetation analysis aided by TWINSPAN revealed that the shrub-type is defined more on the basis of absence of Pinus and Juniperus rather than any special association of differential species with a high preference for this type. We interpret the ";";invasion";"; of the shrub-type by Pinus and Juniperus as a ";";reoccupation.";"; Indirect ordination using DECORANA inferred 2 environmental gradients, a moisture gradient and perhaps a substrate texture gradient, that appeared to influence vegetation distribution on Fishtail Mesa. Fishtail Mesa is a valuable relict area for studying the effects of livestock grazing and prescribed fire. It should be designated a Federal Research Natural Area based on its vegetation communities, size, and protection afforded by its location in Grand Canyon National Park.     

Mutations in a new gene encoding a thiamine transporter cause thiamine-responsive megaloblastic anaemia syndrome.

Thiamine-responsive megaloblastic anaemia syndrome (TRMA; MIM 249270) is an autosomal recessive disorder with features that include megaloblastic anaemia, mild thrombocytopenia and leucopenia, sensorineural deafness and diabetes mellitus. Treatment with pharmacologic doses of thiamine ameliorates the megaloblastic anaemia and diabetes mellitus. A defect in the plasma membrane transport of thiamine has been demonstrated in erythrocytes and cultured skin fibroblasts from TRMA patients. The gene causing TRMA was assigned to 1q23.2-q23.3 by linkage analysis. Here we report the cloning of a new gene, SLC19A2, identified from high-through-put genomic sequences due to homology with SLC19A1, encoding reduced folate carrier 1 (refs 8-10). We cloned the entire coding region by screening a human fetal brain cDNA library. SLC19A2 encodes a protein (of 497 aa) predicted to have 12 transmembrane domains. We identified 2 frameshift mutations in exon 2. a 1-bp insertion and a 2-bp deletion, among four Iranian families with TRMA. The sequence homology and predicted structure of SLC19A2, as well as its role in TRMA, suggest that its gene product is a thiamine carrier, the first to be identified in complex eukaryotes.     

A single EFEMP1 mutation associated with both Malattia Leventinese and Doyne honeycomb retinal dystrophy.

Malattia Leventinese (ML) and Doyne honeycomb retinal dystrophy (DHRD) refer to two autosomal dominant diseases characterized by yellow-white deposits known as drusen that accumulate beneath the retinal pigment epithelium (RPE). Both loci were mapped to chromosome 2p16-21 (refs 5,6) and this genetic interval has been subsequently narrowed. The importance of these diseases is due in large part to their close phenotypic similarity to age-related macular degeneration (AMD), a disorder with a strong genetic component that accounts for approximately 50% of registered blindness in the Western world. Just as in ML and DHRD, the early hallmark of AMD is the presence of drusen. Here we use a combination of positional and candidate gene methods to identify a single non-conservative mutation (Arg345Trp) in the gene EFEMP1 (for EGF-containing fibrillin-like extracellular matrix protein 1) in all families studied. This change was not present in 477 control individuals or in 494 patients with age-related macular degeneration. Identification of this mutation may aid in the development of an animal model for drusen, as well as in the identification of other genes involved in human macular degeneration.     

Radiation hybrid map of the mouse genome.

Radiation hybrid (RH) maps are a useful tool for genome analysis, providing a direct method for localizing genes and anchoring physical maps and genomic sequence along chromosomes. The construction of a comprehensive RH map for the human genome has resulted in gene maps reflecting the location of more than 30,000 human genes. Here we report the first comprehensive RH map of the mouse genome. The map contains 2,486 loci screened against an RH panel of 93 cell lines. Most loci (93%) are simple sequence length polymorphisms (SSLPs) taken from the mouse genetic map, thereby providing direct integration between these two key maps. We performed RH mapping by a new and efficient approach in which we replaced traditional gel- or hybridization-based assays by a homogeneous 5'-nuclease assays involving a single common probe for all genetic markers. The map provides essentially complete connectivity and coverage across the genome, and good resolution for ordering loci, with 1 centiRay (cR) corresponding to an average of approximately 100 kb. The RH map, together with an accompanying World-Wide Web server, makes it possible for any investigator to rapidly localize sequences in the mouse genome. Together with the previously constructed genetic map and a YAC-based physical map reported in a companion paper, the fundamental maps required for mouse genomics are now available.     

Vaccination against and treatment of tuberculosis, the leishmaniases and AIDS: perspectives from basic immunology and immunity to chronic intracellular infections

The occurrence of infectious disease represents a failure of the immune system, a failure that must be prevented by effective vaccination or remedied by treatment. Vaccination against acute diseases such as smallpox and polio are very effective, due to the rapid and increased immune response of vaccinated individuals upon natural infection. In contrast, effective vaccination against intracellular pathogens that cause chronic diseases, such as the leishmaniases, tuberculosis and AIDS, has not been achieved. Clinical observations suggest cell-mediated, Th1 responses, exclusive of antibody production and the generation of Th2 cells, are optimally protective against these intracellular pathogens. Effective vaccination must ensure the generation of such a protective response. We explore here whether understanding very broad features of the regulation of the immune response can accommodate modern findings on the immunological features of these diseases, and provide a perspective within which strategies for effective vaccination and treatment can be developed.