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911.
912.
Fungi are the principal degraders of biomass in terrestrial ecosystems and establish important interactions with plants and animals. However, our current understanding of fungal evolutionary diversity is incomplete and is based upon species amenable to growth in culture. These culturable fungi are typically yeast or filamentous forms, bound by a rigid cell wall rich in chitin. Evolution of this body plan was thought critical for the success of the Fungi, enabling them to adapt to heterogeneous habitats and live by osmotrophy: extracellular digestion followed by nutrient uptake. Here we investigate the ecology and cell biology of a previously undescribed and highly diverse form of eukaryotic life that branches with the Fungi, using environmental DNA analyses combined with fluorescent detection via DNA probes. This clade is present in numerous ecosystems including soil, freshwater and aquatic sediments. Phylogenetic analyses using multiple ribosomal RNA genes place this clade with Rozella, the putative primary branch of the fungal kingdom. Tyramide signal amplification coupled with group-specific fluorescence in situ hybridization reveals that the target cells are small eukaryotes of 3-5?μm in length, capable of forming a microtubule-based flagellum. Co-staining with cell wall markers demonstrates that representatives from the clade do not produce a chitin-rich cell wall during any of the life cycle stages observed and therefore do not conform to the standard fungal body plan. We name this highly diverse clade the cryptomycota in anticipation of formal classification. 相似文献
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Lorenzen ED Nogués-Bravo D Orlando L Weinstock J Binladen J Marske KA Ugan A Borregaard MK Gilbert MT Nielsen R Ho SY Goebel T Graf KE Byers D Stenderup JT Rasmussen M Campos PF Leonard JA Koepfli KP Froese D Zazula G Stafford TW Aaris-Sørensen K Batra P Haywood AM Singarayer JS Valdes PJ Boeskorov G Burns JA Davydov SP Haile J Jenkins DL Kosintsev P Kuznetsova T Lai X Martin LD McDonald HG Mol D Meldgaard M Munch K Stephan E Sablin M Sommer RS Sipko T Scott E Suchard MA Tikhonov A Willerslev R 《Nature》2011,479(7373):359-364
Despite decades of research, the roles of climate and humans in driving the dramatic extinctions of large-bodied mammals during the Late Quaternary period remain contentious. Here we use ancient DNA, species distribution models and the human fossil record to elucidate how climate and humans shaped the demographic history of woolly rhinoceros, woolly mammoth, wild horse, reindeer, bison and musk ox. We show that climate has been a major driver of population change over the past 50,000 years. However, each species responds differently to the effects of climatic shifts, habitat redistribution and human encroachment. Although climate change alone can explain the extinction of some species, such as Eurasian musk ox and woolly rhinoceros, a combination of climatic and anthropogenic effects appears to be responsible for the extinction of others, including Eurasian steppe bison and wild horse. We find no genetic signature or any distinctive range dynamics distinguishing extinct from surviving species, emphasizing the challenges associated with predicting future responses of extant mammals to climate and human-mediated habitat change. 相似文献
917.
Metagenomic analysis of a permafrost microbial community reveals a rapid response to thaw 总被引:2,自引:0,他引:2
Mackelprang R Waldrop MP DeAngelis KM David MM Chavarria KL Blazewicz SJ Rubin EM Jansson JK 《Nature》2011,480(7377):368-371
Permafrost contains an estimated 1672?Pg carbon (C), an amount roughly equivalent to the total currently contained within land plants and the atmosphere. This reservoir of C is vulnerable to decomposition as rising global temperatures cause the permafrost to thaw. During thaw, trapped organic matter may become more accessible for microbial degradation and result in greenhouse gas emissions. Despite recent advances in the use of molecular tools to study permafrost microbial communities, their response to thaw remains unclear. Here we use deep metagenomic sequencing to determine the impact of thaw on microbial phylogenetic and functional genes, and relate these data to measurements of methane emissions. Metagenomics, the direct sequencing of DNA from the environment, allows the examination of whole biochemical pathways and associated processes, as opposed to individual pieces of the metabolic puzzle. Our metagenome analyses reveal that during transition from a frozen to a thawed state there are rapid shifts in many microbial, phylogenetic and functional gene abundances and pathways. After one week of incubation at 5?°C, permafrost metagenomes converge to be more similar to each other than while they are frozen. We find that multiple genes involved in cycling of C and nitrogen shift rapidly during thaw. We also construct the first draft genome from a complex soil metagenome, which corresponds to a novel methanogen. Methane previously accumulated in permafrost is released during thaw and subsequently consumed by methanotrophic bacteria. Together these data point towards the importance of rapid cycling of methane and nitrogen in thawing permafrost. 相似文献
918.
Vacic V McCarthy S Malhotra D Murray F Chou HH Peoples A Makarov V Yoon S Bhandari A Corominas R Iakoucheva LM Krastoshevsky O Krause V Larach-Walters V Welsh DK Craig D Kelsoe JR Gershon ES Leal SM Dell Aquila M Morris DW Gill M Corvin A Insel PA McClellan J King MC Karayiorgou M Levy DL DeLisi LE Sebat J 《Nature》2011,471(7339):499-503
919.
Regression models are widely used in forecasting, either directly as prediction equations, or indirectly as the basis of other procedures. The predictive performance of a regression model can be adversely affected by both multicollinearity and high-leverage data points. Although biased estimation procedures have been proposed as an alternative to least squares, there has been little analysis of the predictive performance of the resulting equations. This paper discusses the predictive performance of various biased estimators, emphasizing the concept that the predictive region, as well as the strength of the multicollinearity, dictates the choice of appropriate coefficient estimators. 相似文献
920.
Mathematics used to be portrayed as a deductive science. Stemming from Polya (1954), however, is a philosophical movement which broadens the concept of mathematical reasoning to include inductive or quasi-empirical methods. Interest in inductive methods is a welcome turn from foundationalism toward a philosophy grounded in mathematical practice. Regrettably, though, the conception of mathematical reasoning embraced by quasi-empiricists is still too narrow to include the sort of thought-experiment which Mueller describes as traditional mathematical proof (Mueller, 1969, p. 295) and which Lakatos examines in Proofs and refutations (Lakatos, 1976). This paper extends the concept of mathematical reasoning along two further dimensions to accommodate thought-experiment. 相似文献