A global synthesis reveals biodiversity loss as a major driver of ecosystem change

Evidence is mounting that extinctions are altering key processes important to the productivity and sustainability of Earth's ecosystems. Further species loss will accelerate change in ecosystem processes, but it is unclear how these effects compare to the direct effects of other forms of environmental change that are both driving diversity loss and altering ecosystem function. Here we use a suite of meta-analyses of published data to show that the effects of species loss on productivity and decomposition--two processes important in all ecosystems--are of comparable magnitude to the effects of many other global environmental changes. In experiments, intermediate levels of species loss (21-40%) reduced plant production by 5-10%, comparable to previously documented effects of ultraviolet radiation and climate warming. Higher levels of extinction (41-60%) had effects rivalling those of ozone, acidification, elevated CO(2) and nutrient pollution. At intermediate levels, species loss generally had equal or greater effects on decomposition than did elevated CO(2) and nitrogen addition. The identity of species lost also had a large effect on changes in productivity and decomposition, generating a wide range of plausible outcomes for extinction. Despite the need for more studies on interactive effects of diversity loss and environmental changes, our analyses clearly show that the ecosystem consequences of local species loss are as quantitatively significant as the direct effects of several global change stressors that have mobilized major international concern and remediation efforts.     

Sulphur isotope evidence for an oxic Archaean atmosphere

The presence of mass-independently fractionated sulphur isotopes (MIF-S) in many sedimentary rocks older than approximately 2.4 billion years (Gyr), and the absence of MIF-S in younger rocks, has been considered the best evidence for a dramatic change from an anoxic to oxic atmosphere around 2.4 Gyr ago. This is because the only mechanism known to produce MIF-S has been ultraviolet photolysis of volcanic sulphur dioxide gas in an oxygen-poor atmosphere. Here we report the absence of MIF-S throughout approximately 100-m sections of 2.76-Gyr-old lake sediments and 2.92-Gyr-old marine shales in the Pilbara Craton, Western Australia. We propose three possible interpretations of the MIF-S geologic record: (1) the level of atmospheric oxygen fluctuated greatly during the Archaean era; (2) the atmosphere has remained oxic since approximately 3.8 Gyr ago, and MIF-S in sedimentary rocks represents times and regions of violent volcanic eruptions that ejected large volumes of sulphur dioxide into the stratosphere; or (3) MIF-S in rocks was mostly created by non-photochemical reactions during sediment diagenesis, and thus is not linked to atmospheric chemistry.     

Human chromosome 11 DNA sequence and analysis including novel gene identification

Chromosome 11, although average in size, is one of the most gene- and disease-rich chromosomes in the human genome. Initial gene annotation indicates an average gene density of 11.6 genes per megabase, including 1,524 protein-coding genes, some of which were identified using novel methods, and 765 pseudogenes. One-quarter of the protein-coding genes shows overlap with other genes. Of the 856 olfactory receptor genes in the human genome, more than 40% are located in 28 single- and multi-gene clusters along this chromosome. Out of the 171 disorders currently attributed to the chromosome, 86 remain for which the underlying molecular basis is not yet known, including several mendelian traits, cancer and susceptibility loci. The high-quality data presented here--nearly 134.5 million base pairs representing 99.8% coverage of the euchromatic sequence--provide scientists with a solid foundation for understanding the genetic basis of these disorders and other biological phenomena.     

Adipocytes as regulators of energy balance and glucose homeostasis

Adipocytes have been studied with increasing intensity as a result of the emergence of obesity as a serious public health problem and the realization that adipose tissue serves as an integrator of various physiological pathways. In particular, their role in calorie storage makes adipocytes well suited to the regulation of energy balance. Adipose tissue also serves as a crucial integrator of glucose homeostasis. Knowledge of adipocyte biology is therefore crucial for understanding the pathophysiological basis of obesity and metabolic diseases such as type 2 diabetes. Furthermore, the rational manipulation of adipose physiology is a promising avenue for therapy of these conditions.     

Platensimycin is a selective FabF inhibitor with potent antibiotic properties

Bacterial infection remains a serious threat to human lives because of emerging resistance to existing antibiotics. Although the scientific community has avidly pursued the discovery of new antibiotics that interact with new targets, these efforts have met with limited success since the early 1960s. Here we report the discovery of platensimycin, a previously unknown class of antibiotics produced by Streptomyces platensis. Platensimycin demonstrates strong, broad-spectrum Gram-positive antibacterial activity by selectively inhibiting cellular lipid biosynthesis. We show that this anti-bacterial effect is exerted through the selective targeting of beta-ketoacyl-(acyl-carrier-protein (ACP)) synthase I/II (FabF/B) in the synthetic pathway of fatty acids. Direct binding assays show that platensimycin interacts specifically with the acyl-enzyme intermediate of the target protein, and X-ray crystallographic studies reveal that a specific conformational change that occurs on acylation must take place before the inhibitor can bind. Treatment with platensimycin eradicates Staphylococcus aureus infection in mice. Because of its unique mode of action, platensimycin shows no cross-resistance to other key antibiotic-resistant strains tested, including methicillin-resistant S. aureus, vancomycin-intermediate S. aureus and vancomycin-resistant enterococci. Platensimycin is the most potent inhibitor reported for the FabF/B condensing enzymes, and is the only inhibitor of these targets that shows broad-spectrum activity, in vivo efficacy and no observed toxicity.     

Mitoferrin is essential for erythroid iron assimilation

Iron has a fundamental role in many metabolic processes, including electron transport, deoxyribonucleotide synthesis, oxygen transport and many essential redox reactions involving haemoproteins and Fe-S cluster proteins. Defective iron homeostasis results in either iron deficiency or iron overload. Precise regulation of iron transport in mitochondria is essential for haem biosynthesis, haemoglobin production and Fe-S cluster protein assembly during red cell development. Here we describe a zebrafish mutant, frascati (frs), that shows profound hypochromic anaemia and erythroid maturation arrest owing to defects in mitochondrial iron uptake. Through positional cloning, we show that the gene mutated in the frs mutant is a member of the vertebrate mitochondrial solute carrier family (SLC25) that we call mitoferrin (mfrn). mfrn is highly expressed in fetal and adult haematopoietic tissues of zebrafish and mouse. Erythroblasts generated from murine embryonic stem cells null for Mfrn (also known as Slc25a37) show maturation arrest with severely impaired incorporation of 55Fe into haem. Disruption of the yeast mfrn orthologues, MRS3 and MRS4, causes defects in iron metabolism and mitochondrial Fe-S cluster biogenesis. Murine Mfrn rescues the defects in frs zebrafish, and zebrafish mfrn complements the yeast mutant, indicating that the function of the gene may be highly conserved. Our data show that mfrn functions as the principal mitochondrial iron importer essential for haem biosynthesis in vertebrate erythroblasts.     

Compartmentalization of S-RNase and HT-B degradation in self-incompatible Nicotiana

Pollen-pistil interactions are crucial for controlling plant mating. For example, S-RNase-based self-incompatibility prevents inbreeding in diverse angiosperm species. S-RNases are thought to function as specific cytotoxins that inhibit pollen that has an S-haplotype that matches one of those in the pistil. Thus, pollen and pistil factors interact to prevent mating between closely related individuals. Other pistil factors, such as HT-B, 4936-factor and the 120 kDa glycoprotein, are also required for pollen rejection but do not contribute to S-haplotype-specificity per se. Here we show that S-RNase is taken up and sorted to a vacuolar compartment in the pollen tubes. Antibodies to the 120 kDa glycoprotein label the compartment membrane. When the pistil does not express HT-B or 4936-factor, S-RNase remains sequestered, unable to cause rejection. Similarly, in wild-type pistils, compatible pollen tubes degrade HT-B and sequester S-RNase. We suggest that S-RNase trafficking and the stability of HT-B are central to S-specific pollen rejection.     

Respiration characteristics differ among cheatgrass ( Bromus tectorum L.) populations

Cheatgrass ( Bromus tectorum L.) is a dominant weed that has increased the frequency of wildfire in the Great Basin since its introduction about 100 yr ago. This study examines characteristics of respiratory metabolism in several different populations. Seeds from 6 populations were germinated and metabolic heat rates (q) and dark respiration rates (R co2 ) of all seedlings were measured calorimetrically at 15° and 25° C or (for 3 populations) at 5° intervals from 5° to 35° C. Growth rates, substrate carbon conversion efficiencies, and Arrhenius temperature coefficients were calculated from the data. Results show that cheatgrass metabolism is most efficient at temperatures near 0° C; at temperatures above 20-25° C, efficiency goes to zero. Cheatgrass populations differ in their temperature dependencies of substrate carbon conversion efficiency and predicted growth rate. Measurements of respiratory heat and CO 2 rates as functions of temperature can be made relatively quickly and used to aid understanding of metabolic adaptation by invasive and native species to the environment.     

Winter nutritive content of black sagebrush ( Artemisia nova ) grown in a uniform garden

Winter crude protein content, in vitro digestibility, and productivity were determined for seven accessions of black sagebrush ( Artemisia nova ) grown in a uniform garden. No significant differences were detected among the accessions for any of these attributes. Mean crude protein was 6.8% of dry matter. Accessional range was from 5.8% to 7.3%. Mean in vitro digestion was 54.8% of dry matter; accessional range, 51.9% to 57.2%. Mean current year's growth (a measurement of productivity) was 4.3 cm; accessional range, from 3.7 to 5.1 cm. In comparison to other winter forages, black sagebrush ranks high for winter levels of crude protein and very high in winter digestible dry matter but low in productivity.     

Nonstructural carbohydrate and element pools in globemallow ( Sphaeralcea ): defoliation effects and seasonal trends

Globemallows ( Sphaeralcea spp.) are arid land forbs suitable for seeding with crested wheatgrass ( Agropyron cristatum [L.] Geartner). However, little is known about the quantitative role of total nonstructural carbohydrates (TNC) in relation to globemallow tolerance of grazing, or about seasonal dynamics of mineral elements. The objectives of this study were to compare TNC and element pools (concentration x biomass) in the roots, crowns, and shoots of clipped versus unclipped S. munroana (Dogl.) Spach. Seedlings of S. munroana were transplanted to a northern Utah field site in 1985. Interplanted crested wheatgrass provided uniform competitive background. One-half of the globemallows were clipped to 5 cm on 10 May 1986 when stems were elongating the root and crown TNC pools were low. The remaining globemallows were not clipped. Root, crown and shoot pools of TNC and elements (N, P, K, Ca, and MG) were determined on 1 May, 20 May, 7 June, 11 July, 22 September, and 5 November 1986, and 29 May 1987. Defoliation did not affect shoot weights during a 1-year period. Experiment-long TNC and element pools also were not affected by clipping. Results indicate that S. munroana shoot recovery from a single spring grazing during a 1-year period would not be impaired by low root and crown TNC pools, and that TNC stored in the roots and crowns would account for only 7% of the regrowth produced. Furthermore, TNC and element pools of roots and crowns were generally constant from May to September but increased from September to November. TNC and element pools in shoots increased from May to September and then generally declined by November. TNC Pools of roots and crowns declined during winter.