Defining the core Arabidopsis thaliana root microbiome

Land plants associate with a root microbiota distinct from the complex microbial community present in surrounding soil. The microbiota colonizing the rhizosphere (immediately surrounding the root) and the endophytic compartment (within the root) contribute to plant growth, productivity, carbon sequestration and phytoremediation. Colonization of the root occurs despite a sophisticated plant immune system, suggesting finely tuned discrimination of mutualists and commensals from pathogens. Genetic principles governing the derivation of host-specific endophyte communities from soil communities are poorly understood. Here we report the pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana plants to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of plants grown under controlled conditions in natural soils are sufficiently dependent on the host to remain consistent across different soil types and developmental stages, and sufficiently dependent on host genotype to vary between inbred Arabidopsis accessions. We describe different bacterial communities in two geochemically distinct bulk soils and in rhizosphere and endophytic compartments prepared from roots grown in these soils. The communities in each compartment are strongly influenced by soil type. Endophytic compartments from both soils feature overlapping, low-complexity communities that are markedly enriched in Actinobacteria and specific families from other phyla, notably Proteobacteria. Some bacteria vary quantitatively between plants of different developmental stage and genotype. Our rigorous definition of an endophytic compartment microbiome should facilitate controlled dissection of plant-microbe interactions derived from complex soil communities.     

The thermodynamic meaning of negative entropy

The heat generated by computations is not only an obstacle to circuit miniaturization but also a fundamental aspect of the relationship between information theory and thermodynamics. In principle, reversible operations may be performed at no energy cost; given that irreversible computations can always be decomposed into reversible operations followed by the erasure of data, the problem of calculating their energy cost is reduced to the study of erasure. Landauer's principle states that the erasure of data stored in a system has an inherent work cost and therefore dissipates heat. However, this consideration assumes that the information about the system to be erased is classical, and does not extend to the general case where an observer may have quantum information about the system to be erased, for instance by means of a quantum memory entangled with the system. Here we show that the standard formulation and implications of Landauer's principle are no longer valid in the presence of quantum information. Our main result is that the work cost of erasure is determined by the entropy of the system, conditioned on the quantum information an observer has about it. In other words, the more an observer knows about the system, the less it costs to erase it. This result gives a direct thermodynamic significance to conditional entropies, originally introduced in information theory. Furthermore, it provides new bounds on the heat generation of computations: because conditional entropies can become negative in the quantum case, an observer who is strongly correlated with a system may gain work while erasing it, thereby cooling the environment.     

The importance of the diurnal and annual cycle of air traffic for contrail radiative forcing

Air traffic condensation trails, or contrails, are believed to have a net atmospheric warming effect, although one that is currently small compared to that induced by other sources of human emissions. However, the comparably large growth rate of air traffic requires an improved understanding of the resulting impact of aircraft radiative forcing on climate. Contrails have an effect on the Earth's energy balance similar to that of high thin ice clouds. Their trapping of outgoing longwave radiation emitted by the Earth and atmosphere (positive radiative forcing) is partly compensated by their reflection of incoming solar radiation (negative radiative forcing). On average, the longwave effect dominates and the net contrail radiative forcing is believed to be positive. Over daily and annual timescales, varying levels of air traffic, meteorological conditions, and solar insolation influence the net forcing effect of contrails. Here we determine the factors most important for contrail climate forcing using a sophisticated radiative transfer model for a site in southeast England, located in the entrance to the North Atlantic flight corridor. We find that night-time flights during winter (December to February) are responsible for most of the contrail radiative forcing. Night flights account for only 25 per cent of daily air traffic, but contribute 60 to 80 per cent of the contrail forcing. Further, winter flights account for only 22 per cent of annual air traffic, but contribute half of the annual mean forcing. These results suggest that flight rescheduling could help to minimize the climate impact of aviation.     

Reconciling the temperature dependence of respiration across timescales and ecosystem types

Ecosystem respiration is the biotic conversion of organic carbon to carbon dioxide by all of the organisms in an ecosystem, including both consumers and primary producers. Respiration exhibits an exponential temperature dependence at the subcellular and individual levels, but at the ecosystem level respiration can be modified by many variables including community abundance and biomass, which vary substantially among ecosystems. Despite its importance for predicting the responses of the biosphere to climate change, it is as yet unknown whether the temperature dependence of ecosystem respiration varies systematically between aquatic and terrestrial environments. Here we use the largest database of respiratory measurements yet compiled to show that the sensitivity of ecosystem respiration to seasonal changes in temperature is remarkably similar for diverse environments encompassing lakes, rivers, estuaries, the open ocean and forested and non-forested terrestrial ecosystems, with an average activation energy similar to that of the respiratory complex (approximately 0.65?electronvolts (eV)). By contrast, annual ecosystem respiration shows a substantially greater temperature dependence across aquatic (approximately 0.65?eV) versus terrestrial ecosystems (approximately 0.32?eV) that span broad geographic gradients in temperature. Using a model derived from metabolic theory, these findings can be reconciled by similarities in the biochemical kinetics of metabolism at the subcellular level, and fundamental differences in the importance of other variables besides temperature—such as primary productivity and allochthonous carbon inputs—on the structure of aquatic and terrestrial biota at the community level.     

A new cellular function for peroxisomes related to oxygen free radicals?

Although in cell biology peroxisomes are still 'young' organelles, it is becoming increasingly clear that they are involved in important cellular functions. Recent results have indicated the presence of the metalloenzyme superoxide dismutase in peroxisomes and the production of superoxide free radicals (O2-) in these oxidative organelles. These findings, together with other experimental evidence, point towards the existence of new roles for peroxisomes in cellular active oxygen metabolism, something that has a potential impact in multiple areas of cell biology, particularly in biochemistry and biomedicine.     

Lesions in suprachiasmatic nuclei simulate effects of pinealectomy on prolactin release in ovariectomized and sulpiride-treated female rats

Previous studies indicate that the pineal gland alters prolactin secretion, and it was suggested that at least part of the effect of the pineal hormone melatonin on prolactin release may be mediated by the hypothalamic structures. In this study, pinealectomy and lesions of the suprachiasmatic nuclei were found to alter serum levels of prolactin in the same direction, an effect that was counteracted by daily afternoon melatonin administration. Melatonin, but not other pineal indoles, also prevented sulpiride-induced prolactin secretion in pinealectomized or suprachiasmatic nuclei-lesioned and ovariectomized rats, which suggested that the pineal gland can modulate prolactin secretion by acting through a dopamine mechanism independent of hypothalamic suprachiasmatic structures.     

The effect of exogenous conjugated bilirubin on the urinary excretion of unconjugated14C-bilirubin by the Gunn rat

Resumen La inyección de bilirrubina conjugada a ratas Gunn con ligadura coledociana, produce un aumento de la excreción urinaria de bilirrubina C¹⁴ exógena o de la endógena sintetizada a partir de la inyección de ALA-C¹⁴ en dichos animales. Dicho aumento fue probado por la cristalización de la bilirrubina radioactiva de muestras de orina y por la radioactividad presente en el azopigmento A separado por cromatografía sobre papel. El aumento de pigmento I, demostrado en el suero por partitión química y en la orina por columna cromatográfica de fase inversa, permiten suponer la formación de un complejo de bilirrubina no conjugada radioactiva y de bilirrubina conjugada, como mecanismo del pasaje mencionado.

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This work was supported by grants from the Consejo Nacional de Investigaciones Científicas y Técnicas, República Argentina, National Institutes of Health, Bethesda, Md., USA and Ministerio de Salud Pública y Bienestar Social de la Provincia de Santa Fe, República Argentina.     

Effect of glomerulopressin on the lymphatic hearts of the toad,probably mediated by prostaglandins

Summary Glomerulopressin acts on the lymphatic hearts of toads: increasing the passage of T-1824 from the abdominal lymphatic sac to the veins in normal animals, but not in toads treated with indomethacin.     

Immunoglobulins and lymphocyte populations

Resumen Se ha estudiado la relación existente entre la concentración de Ig. sericas y las poblaciones linfocitarias T y B en un grupo de sujetos ancianos, encontrandose un notable descenso de la transformación blasticá al tiempo que se incrementa el porcentage de linfocitos portadores de Ig. en su membrana. De nuestros resultados parece deducirse una relación entre el nivel de Ig. sericas y la población medulo-derivada.     

Microtubule associated protein tau binds to double-stranded but not single-stranded DNA

Tau, a major microtubule-associated protein of the neuron, which is known to promote the assembly of and to stabilize microtubules, has also been seen associated with chromatin in neuronal cell lines, but its role in this subcellular compartment is still unknown. In this study, the binding of tau to DNA was investigated using the electrophoretic mobility shift assay. Using polynucleotide as probe, we found that tau bound to double-stranded but not to single-stranded DNA. Formation of tau-polynucleotide complex was disrupted by alkaline pH and a high concentration of NaCl, but was not affected by dithiothreitol. Electron microscopy revealed that the protein associated with the nucleic acid in a necklacelike manner. DNA-cellulose chromatography and radioimmunodot-blot analyses showed that calf thymus histones VI-S, VII-S and VIII-S could replace both recombinant human brain tau₃₅₂ (tau-23) and tau₄₄₁ (tau-40) from DNA. Thus, tau appears to bind to DNA reversibly in the presence of histones. Received 24 November 2002; received after revision 28 December 2002; accepted 30 December 2002 RID="*" ID="*"Corresponding author.