Molecular recognition of microbial lipid-based antigens by T cells

The immune system has evolved to protect hosts from pathogens. T cells represent a critical component of the immune system by their engagement in host defence mechanisms against microbial infections. Our knowledge of the molecular recognition by T cells of pathogen-derived peptidic antigens that are presented by the major histocompatibility complex glycoproteins is now well established. However, lipids represent an additional, distinct chemical class of molecules that when presented by the family of CD1 antigen-presenting molecules can serve as antigens, and be recognized by specialized subsets of T cells leading to antigen-specific activation. Over the past decades, numerous CD1-presented self- and bacterial lipid-based antigens have been isolated and characterized. However, our understanding at the molecular level of T cell immunity to CD1 molecules presenting microbial lipid-based antigens is still largely unexplored. Here, we review the insights and the molecular basis underpinning the recognition of microbial lipid-based antigens by T cells.     

The Hill equation and the origin of quantitative pharmacology

This review addresses the 100-year-old Hill equation (published in January 22, 1910), the first formula relating the result of a reversible association (e.g., concentration of a complex, magnitude of an effect) to the variable concentration of one of the associating substances (the other being present in a constant and relatively low concentration). In addition, the Hill equation was the first (and is the simplest) quantitative receptor model in pharmacology. Although the Hill equation is an empirical receptor model (its parameters have only physico-chemical meaning for a simple ligand binding reaction), it requires only minor a priori knowledge about the mechanism of action for the investigated agonist to reliably fit concentration-response curve data and to yield useful results (in contrast to most of the advanced receptor models). Thus, the Hill equation has remained an important tool for physiological and pharmacological investigations including drug discovery, moreover it serves as a theoretical basis for the development of new pharmacological models.     

Taxonomy and variation of the Lopidea nigridia complex of western North America (Heteroptera: Miridae, Orthotylinae)

External morphological variation in the Lopidea nigridia "complex" of western North America was examined using principal component analysis and showed continuous variation among populations in most characters. External morphology did not parallel paramere structure and did not substantiate previously recognized species. There was little correlation between dorsal coloration and paramere structure. Cluster analysis (UPGMA) using paramere and color characters failed to group populations coded as the same species and also failed to group all specimens of any one population. The variation in structure of the parameres and vesicae among populations of the nigridia complex was no greater than the interpopulational variation of these structures structures in the congeneric species marginata Uhler. Lopidea nigridia Uhler is treated as a polytypic species comprising three subspecies: Lopidea nigridia nigridia Uhler, a fuscous-white form from the sagebrush steppe of the Great Basin and the chaparral of southern California; Lopidea nigridia serica Knight, a solid red form from the eastern slopes of the Rocky Mountains from Alberta to Colorado and east across the Northern Great Plains to southern Manitoba; Lopidea nigridia aculeata Van Duzee, a polymorphic form varying from solid red to fuscous red and white from the Cascade Mountains and eastern slopes of the coastal ranges of British Columbia, Washington, and Oregon, the Blue and Wallawa mountains of Oregon and Washington, and throughout the Coastal and Sierra Nevada ranges of California. The following new synonymies are created: Lopidea nigridia Uhler -- Lopidea raineri Knight, Lopidea scullent Knight, Lopidea rolfsi Knight, and Lopidea wilcoxi Knight; Lopidea nigridia aculeata Van Duzee -- Lopidea nigridia hirta Van Duzee, Lopidea usingeri Van Duzee, Lopidea discreta Van Duzee, Lopidea fallax Knight, Lopidea Yakima Knight, Lopidea audeni Knight, Lopidea eriogoni Knight, Lopidea calcaria Knight, Lopidea chamberlini Knight, Lopidea angustata Knight, Lopidea rubrofusca Knight, and Lopidea flavicostata Knight and Schaffner; Lopidea nigridia serica Knight -- Lopidea medleri Akingbohungbe.     

Body size, body composition, and behavior of juvenile Belding ground squirrels

Juvenile Belding ground squirrels were studied in the Sierra Nevada. Females were more trappable, had smaller home ranges, and tended to enter hibernation earlier than males. The primary sex ratio was 1:1. Individuals first emerged from the natal burrow at three to four weeks of age and a body weight of 35 g. Body weight and linear dimensions increased thereafter until hibernation began. Maximum prehibernatory weight of 200 to 260 g was attained at about 12 weeks of age. Prehibernatory fattening began at about six weeks of age. Maximum lipid stores attained weighed about 80 percent of the lean, dry body compartment. Seasonal changes occurred in weight of white and brown fat depots, adrenal glands, spleen, heart, kidneys, liver, and testes. Annual variations in snowpack and emergence schedule caused the reproductive period, and thus phenology of juveniles, to vary by as much as three weeks. The last animals to immerge were unusually small, being from late litters. Nonetheless, they may have had lipid stores sufficient for surviving hibernation.     

Mining patterns of the aspen leaf miner, Phyllocnistis populiella, on its host plant, Populus tremuloides

Feeding behavior of aspen leaf miner ( Phyllocnistis populiella ) larvae on quaking aspen ( Populus tremuloides ) leaves was examined, by using image-analysis software, to determine the pattern and distance of the larvae’s mining trails and measure the surface area of infested leaves and consumed leaf tissue. Mining pathways between hatching and pupation sites were serpentine and generally followed predictable, sequential changes in orientation. This pattern was most obvious in smaller leaves, those with a surface area of about 700 mm 2 or less. In leaves larger than 700 mm 2 , plasticity in mining behavior increased. The serpentine pattern was initiated but became truncated when larvae reached full growth without having to consume all available leaf material. The final phase of the behavioral program was still executed, however, and larvae entered pupation at the usual leaf-edge location. We hypothesize that the serpentine pattern is genetically controlled and that it has been selected for because it promotes efficient consumption of a fixed food supply and ensures a favorable location for pupation, especially when reproductive females oviposit on small leaves. Se examinó el comportamiento alimenticio de la larva del minero de hoja de álamo ( Phyllocnistis populiella ) en las hojas del álamo temblante ( Populus tremuloides ) utilizando software de análisis de imágenes para determinar el patrón y la longitud del rastro de las larvas y medir la superficie de las hojas infestadas y del tejido de hoja consumido. Los rastros del minero entre los sitios de eclosión y los de pupación fueron serpentinos, y en general sus cambios de orientación fueron predecibles y secuenciales. Esto fue más obvio en las hojas pequeñas, aquellas con una superficie de menos de 700 mm 2 . En las hojas con una superficie mayor de 700 mm 2 aumentó la plasticidad en el comportamiento minero. El patrón serpentino apareció al inicio pero se truncó cuando las larvas alcanzaron su pleno desarrollo sin tener que consumir todo el material herbáceo disponible. Sin embargo, la última fase del patrón conductual aún se llevó a cabo, y comenzaron la pupación en el borde de la hoja como de costumbre. Planteamos la hipótesis de que el patrón serpentino tiene origen genético y que ha sido seleccionado a favor porque facilita el consumo eficiente de un suministro fijo de alimento y garantiza un lugar favorable para la pupación, especialmente cuando las hembras reproductoras ovipositan en hojas pequeñas.     

The organs of prey capture and digestion in the miniature predatory bivalve Spheniopsis brasiliensis (Anomalodesmata: Cuspidarioidea: Spheniopsidae) expose a novel life-history trait

Spheniopsis brasiliensis, from depths of 17–148 m off the southern Atlantic coast of Brazil, is a predator of epipsammic micro-crustaceans which it sucks into the infra-septal chamber using a raptorial inhalant siphon and internally generated hydrostatic suction forces. Prey items, which include ostracods, are thought to be pushed into the funnel-shaped mouth using the foot. The stomach is capacious with a short style sac conjoined briefly with the mid gut and possessing a stubby crystalline style. Internal stomach architecture is simplified, with no identifiable sorting areas (unlike other cuspidarioids) and lined virtually completely by a gastric shield. The exoskeletal remains of digested prey are held in the posterior end of the stomach and not in a specialised waste storage pouch as in the con-familial Grippina coronata. The mid gut, hind gut and rectum are all extremely narrow and, thus, only the smallest of faeces can be accommodated and transmitted for anal discharge. Spheniopsis brasiliensis, like G. coronata is a self-fertilising simultaneous hermaphrodite with encapsulated lecithotrophic eggs brooded internally. Both taxa are thus ovovivaporous. It is also believed that both taxa are univoltine so that larvae and the exoskeletal prey remains are all released post mortem. Cuspidariids are generally regarded as dioecious but, recently, Cardiomya costellata has been shown to be a non-brooding simultaneous hermaphrodite. The distinguishing characters between cuspidariids and spheniopsids thus appear to be their differing reproductive strategies and life history traits.     

The patterns and dynamics of genomic instability in metastatic pancreatic cancer

Pancreatic cancer is an aggressive malignancy with a five-year mortality of 97-98%, usually due to widespread metastatic disease. Previous studies indicate that this disease has a complex genomic landscape, with frequent copy number changes and point mutations, but genomic rearrangements have not been characterized in detail. Despite the clinical importance of metastasis, there remain fundamental questions about the clonal structures of metastatic tumours, including phylogenetic relationships among metastases, the scale of ongoing parallel evolution in metastatic and primary sites, and how the tumour disseminates. Here we harness advances in DNA sequencing to annotate genomic rearrangements in 13 patients with pancreatic cancer and explore clonal relationships among metastases. We find that pancreatic cancer acquires rearrangements indicative of telomere dysfunction and abnormal cell-cycle control, namely dysregulated G1-to-S-phase transition with intact G2-M checkpoint. These initiate amplification of cancer genes and occur predominantly in early cancer development rather than the later stages of the disease. Genomic instability frequently persists after cancer dissemination, resulting in ongoing, parallel and even convergent evolution among different metastases. We find evidence that there is genetic heterogeneity among metastasis-initiating cells, that seeding metastasis may require driver mutations beyond those required for primary tumours, and that phylogenetic trees across metastases show organ-specific branches. These data attest to the richness of genetic variation in cancer, brought about by the tandem forces of genomic instability and evolutionary selection.