Endangered species: where leatherback turtles meet fisheries

The dramatic worldwide decline in populations of the leatherback turtle (Dermochelys coriacea) is largely due to the high mortality associated with their interaction with fisheries, so a reduction of this overlap is critical to their survival. The discovery of narrow migration corridors used by the leatherbacks in the Pacific Ocean raised the possibility of protecting the turtles by restricting fishing in these key areas. Here we use satellite tracking to show that there is no equivalent of these corridors in the North Atlantic Ocean, because the turtles disperse actively over the whole area. But we are able to identify a few 'hot spots' where leatherbacks meet fisheries and where conservation efforts should be focused.     

Small-scale structure of the geodynamo inferred from Oersted and Magsat satellite data

The 'geodynamo' in the Earth's liquid outer core produces a magnetic field that dominates the large and medium length scales of the magnetic field observed at the Earth's surface. Here we use data from the currently operating Danish Oersted satellite, and from the US Magsat satellite that operated in 1979/80, to identify and interpret variations in the magnetic field over the past 20 years, down to length scales previously inaccessible. Projected down to the surface of the Earth's core, we found these variations to be small below the Pacific Ocean, and large at polar latitudes and in a region centred below southern Africa. The flow pattern at the surface of the core that we calculate to account for these changes is characterized by a westward flow concentrated in retrograde polar vortices and an asymmetric ring where prograde vortices are correlated with highs (and retrograde vortices with lows) in the historical (400-year average) magnetic field. This pattern is analogous to those seen in a large class of numerical dynamo simulations, except for its longitudinal asymmetry. If this asymmetric state was reached often in the past, it might account for several persistent patterns observed in the palaeomagnetic field. We postulate that it might also be a state in which the geodynamo operates before reversing.     

Thermochemical flows couple the Earth's inner core growth to mantle heterogeneity

Seismic waves sampling the top 100 km of the Earth's inner core reveal that the eastern hemisphere (40 degrees E-180 degrees E) is seismically faster, more isotropic and more attenuating than the western hemisphere. The origin of this hemispherical dichotomy is a challenging problem for our understanding of the Earth as a system of dynamically coupled layers. Previously, laboratory experiments have established that thermal control from the lower mantle can drastically affect fluid flow in the outer core, which in turn can induce textural heterogeneity on the inner core solidification front. The resulting texture should be consistent with other expected manifestations of thermal mantle control on the geodynamo, specifically magnetic flux concentrations in the time-average palaeomagnetic field over the past 5 Myr, and preferred eddy locations in flows imaged below the core-mantle boundary by the analysis of historical geomagnetic secular variation. Here we show that a single model of thermochemical convection and dynamo action can account for all these effects by producing a large-scale, long-term outer core flow that couples the heterogeneity of the inner core with that of the lower mantle. The main feature of this thermochemical 'wind' is a cyclonic circulation below Asia, which concentrates magnetic field on the core-mantle boundary at the observed location and locally agrees with core flow images. This wind also causes anomalously high rates of light element release in the eastern hemisphere of the inner core boundary, suggesting that lateral seismic anomalies at the top of the inner core result from mantle-induced variations in its freezing rate.     

Trace element characteristics of a Gorham-Stout Syndrome sufferer

Gorham-Stout Syndrome （GSS） is an infrequent and mysterious bone disease characterized by massive bone dissolving or even disappearing due to an unknown pathogeny. It is quite different from the Itai-itai disease and osteoporosis. In 2001, an 8-year-old boy from a small town in Xinjiang was found to get GSS disease. Some parts of his bones vanished without any external force. Results showed that the concentrations of Cd and Cu, especially Na and K in his hair were far higher than those of the healthy people, and the concentration of Cd was 2 times that of the reference while those of Cr and Zn were insufficient for health. The ratio of K/Na was also higher than that of healthy group. Four different ratios revealed weak bone growth potential and strong bone breakage occurred simultaneously in the GSS sufferer＇s skeletal system. It might be the synergistic effect of the trace elements leading to the baffling syndrome. Further investigation demonstrated that the trace elements can cause a series of diseases, including GSS disease and a typical rheumatoid arthritis （ARA）. Epidemiological investigation also proved that there were about 25% of the inhabitants in the town suffered from an ARA. All of these data implied there was significant relationship among Gorham-Stout Syndrome, ARA and prolapse of lumbar intervertebral disc.     

A tree · a window · a hill; generalization of nearest-neighbor interchange in phylogenetic optimization

The method of nearest-neighbor interchange effects local improvements in a binary tree by replacing a 4-subtree by one of its two alternatives if this improves the objective function. We extend this to k-subtrees to reduce the number of local optima. Possible sequences of k-subtrees to be examined are produced by moving a window over the tree, incorporating one edge at a time while deactivating another. The direction of this movement is chosen according to a hill-climbing strategy. The algorithm includes a backtracking component. Series of simulations of molecular evolution data/parsimony analysis are carried out, fork=4, ..., 8, contrasting the hill-climbing strategy to one based on a random choice of next window, and comparing two stopping rules. Increasing window sizek is found to be the most effective way of improving the local optimum, followed by the choice of hill-climbing over the random strategy. A suggestion for achieving higher values ofk is based on a recursive use of the hill-climbing strategy.Acknowledgments: This work was supported in part by grants to the first author from the Natural Sciences and Engineering Research Council (Canada) and theFonds pour la formation de chercheurs et l'aide à la recherche (Québec), and to the third author from the Danish Research Council. The first author is a fellow of the Canadian Institute for Advanced Research. Much of the research was carried out in the spring of 1991 while the first author was visiting the University of Geneva; warmest thanks are due Professor Claude Weber for this opportunity.     

Increased exonic de novo mutation rate in individuals with schizophrenia

Schizophrenia is a severe psychiatric disorder that profoundly affects cognitive, behavioral and emotional processes. The wide spectrum of symptoms and clinical variability in schizophrenia suggest a complex genetic etiology, which is consistent with the numerous loci thus far identified by linkage, copy number variation and association studies. Although schizophrenia heritability may be as high as ～80%, the genes responsible for much of this heritability remain to be identified. Here we sequenced the exomes of 14 schizophrenia probands and their parents. We identified 15 de novo mutations (DNMs) in eight probands, which is significantly more than expected considering the previously reported DNM rate. In addition, 4 of the 15 identified DNMs are nonsense mutations, which is more than what is expected by chance. Our study supports the notion that DNMs may account for some of the heritability reported for schizophrenia while providing a list of genes possibly involved in disease pathogenesis.     

Non-thermal melting in semiconductors measured at femtosecond resolution

Ultrafast time-resolved optical spectroscopy has revealed new classes of physical, chemical and biological reactions, in which directed, deterministic motions of atoms have a key role. This contrasts with the random, diffusive motion of atoms across activation barriers that typically determines kinetic rates on slower timescales. An example of these new processes is the ultrafast melting of semiconductors, which is believed to arise from a strong modification of the inter-atomic forces owing to laser-induced promotion of a large fraction (10% or more) of the valence electrons to the conduction band. The atoms immediately begin to move and rapidly gain sufficient kinetic energy to induce melting--much faster than the several picoseconds required to convert the electronic energy into thermal motions. Here we present measurements of the characteristic melting time of InSb with a recently developed technique of ultrafast time-resolved X-ray diffraction that, in contrast to optical spectroscopy, provides a direct probe of the changing atomic structure. The data establish unambiguously a loss of long-range order up to 900 A inside the crystal, with time constants as short as 350 femtoseconds. This ability to obtain the quantitative structural characterization of non-thermal processes should find widespread application in the study of ultrafast dynamics in other physical, chemical and biological systems.