Translation initiation: variations in the mechanism can be anticipated

Translation initiation is a critical step in protein synthesis. Previously, two major mechanisms of initiation were considered as essential: prokaryotic, based on SD interaction; and eukaryotic, requiring cap structure and ribosomal scanning. Although discovered decades ago, cap-independent translation has recently been acknowledged as a widely spread mechanism in viruses, which may take place in some cellular mRNA translations. Moreover, it has become evident that translation can be initiated on the leaderless mRNA in all three domains of life. New findings demonstrate that other distinguishable types of initiation exist, including SD-independent in Bacteria and Archaea, and various modifications of 5′ end-dependent and internal initiation mechanisms in Eukarya. Since translation initiation has developed through the loss, acquisition, and modification of functional elements, all of which have been elevated by competition with viral translation in a large number of organisms of different complexity, more variation in initiation mechanisms can be anticipated.     

Cytoglobin: biochemical,functional and clinical perspective of the newest member of the globin family

Since the discovery of cytoglobin (Cygb) a decade ago, growing amounts of data have been gathered to characterise Cygb biochemistry, functioning and implication in human pathologies. Its molecular roles remain under investigation, but nitric oxide dioxygenase and lipid peroxidase activities have been demonstrated. Cygb expression increases in response to various stress conditions including hypoxia, oxidative stress and fibrotic stimulation. When exogenously overexpressed, Cygb revealed cytoprotection against these factors. Cygb was shown to be upregulated in fibrosis and neurodegenerative disorders and downregulated in multiple cancer types. CYGB was also found within the minimal region of a hereditary tylosis with oesophageal cancer syndrome, and its expression was reduced in tylotic samples. Recently, Cygb has been shown to inhibit cancer cell growth in vitro, thus confirming its suggested tumour suppressor role. This article aims to review the biochemical and functional aspects of Cygb, its involvement in various pathological conditions and potential clinical utility.     

Notes on significant collections and additions to the flora of Glen Canyon National Recreation Area, Utah and Arizona, between 1992 and 2004

Symphyotrichum expansum (Puepp ex Spreng.) Nesom is reported new to Utah from the Escalante River drainage. A major range extension is reported for Aralia racemosa L. in the Escalante drainage, and additional populations are reported of the rare species Imperata brevifolia Vasey in Utah, including the 1st record for the Grand Staircase--Escalante National Monument. Heterotheca grandiflora Nutt. is reported new to north central Arizona. New locations and notes on an additional 22 rare species in Glen Canyon National Recreation Area are listed.     

Influence of precipitation and temperature on ring, annual branch increment, and needle growth of White Fir and Douglas-fir in central Utah

The study evaluates growth variations in mixed stands of Douglas-fir ( Pseudotsuga menziesii (Mirb.) Franco) and White Fir ( Abies concolor Hoopes) from the Bighorn Ranch in northern Sanpete County, Utah. The study area lies 26 km southwest of Thistle, Utah. Tree-ring width, annual branch growth and needle length for the period 1970–1976 were obtained from Douglas-Fir and White Fir individuals distributed along an altitudinal and moisture gradient. Elevation ranged from 2257 m to 2500 m above sea level. Temperature and precipitation are shown to exert a significant influence on needle and annual branch growth and width of the annual rings. It was found that multiple correlation coefficients were always larger than the simple correlation coefficients. This suggests that the trees are responding to both temperature and precipitation. Annual branch growth is shown to be positively correlated with ring width and needle length. The influence of precipitation on growth is synchronized with 1 October–1 June precipitation. Best growth occurs in cool, moist years and at lower elevations.     

Comparison of two roadside survey procedures for dwarf mistletoes on the Sawtooth National Forest, Idaho

Two roadside surveys were conducted for dwarf mistletoes parasitizing lodgepole pine and Douglas-fir on the Sawtooth National Forest, Idaho. One survey used variable-radius plots located less than 150 m from roads. The 2nd survey used variable-radius plots established at 200-m intervals along 1600-m transects run perpendicular to the same roads. Estimates of the incidence (percentage of trees infected and percentage of plots infested) and severity (average dwarf mistletoe rating) for both lodgepole pine and Douglas-fir dwarf mistletoes were not significantly different for the 2 survey methods. These findings are further evidence that roadside-plot surveys and transect-plot surveys conducted away from roads provide similar estimates of the incidence of dwarf mistletoes for large forested areas.     

Temporal and spatial patterns of small mammal density and species composition on a radioactive waste disposal area: the role of edge habitat

Small mammal populations inhabiting radioactive waste disposal areas could be important vectors of contaminant redistribution, given sufficiently high numbers. Earlier studies conducted at the Subsurface Disposal Area (SDA) in southeastern Idaho found small mammal densities equaling or exceeding densities in native habitat. Our live-trapping study was conducted in 1988 and 1989 to assess the role of edge habitat (where SDA crested wheatgrass [ Agropyron cristatum ] plantings and native sagebrush habitat are separated by an earthen dike) in facilitating use of this highly modified site by small mammals. Small mammals had a significantly greater density in SDA edge habitat than in the interior. Total density of small mammals and immediately around the SDA appeared to be less variable over time than density in native sagebrush habitat for years when data were available. This phenomenon was largely attributable to steady or increasing SDA population densities of the most common species, Peromyscus maniculatus and Perognathus parvus , during 1988-89, when most small mammal species had below-average densities in surrounding areas. The variety of foraging options in edge habitat may have allowed these relatively opportunistic species to avoid widespread population declines associated with drought years in 1988-89. Movements by P. manicualtus across the boundary were common, suggesting that this species did indeed utilize both habitat types. Preferences for edge habitat could potentially be used to formulate strategies that reduce use of waste site by small mammals.     

Nesting and summer habitat use by translocated Sage Grouse ( Centrocercus Urophasianus ) in central Idaho

We translocated 196 Sage Grouse ( Centrocercus urophasianus into Sawtooth Valley, Idaho, during March-April 1986-87 to augment a small resident population. Forty-four grouse equipped with radio transmitters were monitored through spring and summer. Nest sites ( n = 6) had greater ( P = .032) horizontal cover than did independent random plots ( n = 7). During summer, grouse used sites ( n = 50) with taller live and dead shrub heights, greater shrub canopy cover, and more ground litter ( P n = 50) 50-300 m from use sites. Distance to edge and mountain sagebrush ( Artemisia tridentata vaseyana ) density best separated use sites from independent random plots in logistic regression analysis and correctly classified 64% of the use sites and 78% of the independent random plots. Sage Grouse used sties that had narrower frequency distributions for many variables than did independent plots ( P < .04), suggesting selection for uniform habitat.     

Diatom species composition and ecology of the Animas River Watershed, Colorado, USA

The diatom flora of selected sites in the Animas River Watershed, San Juan County, Colorado, was studied. Eighty diatom taxa were identified from 10 sites: 8 sites on the Animas River and 1 site each on the Cement and Cascade tributaries. The sample diatom abundance was dominated by Achnanthidium minutissimum , Encyonema silesiacum , Aulacoseira distans , Hannaea arcus , and Diatoma mesodon . The presence of teratologic specimens of Fragilaria and Achnanthidium in the samples indicated the possibility of metals contamination. Diatom diversity was low and Lange-Bertalot pollution index scores indicated little organic pollution evidenced from diatom composition. There was evidence that diatom composition at the sites was differentially affected by pH and possibly by the concentrations of Zn alone or in combination with Cd, Cu, and Fe.