Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

Since the recognition of prokaryotes as essential components of the oceanic food web, bacterioplankton have been acknowledged as catalysts of most major biogeochemical processes in the sea. Studying heterotrophic bacterioplankton has been challenging, however, as most major clades have never been cultured or have only been grown to low densities in sea water. Here we describe the genome sequence of Silicibacter pomeroyi, a member of the marine Roseobacter clade (Fig. 1), the relatives of which comprise approximately 10-20% of coastal and oceanic mixed-layer bacterioplankton. This first genome sequence from any major heterotrophic clade consists of a chromosome (4,109,442 base pairs) and megaplasmid (491,611 base pairs). Genome analysis indicates that this organism relies upon a lithoheterotrophic strategy that uses inorganic compounds (carbon monoxide and sulphide) to supplement heterotrophy. Silicibacter pomeroyi also has genes advantageous for associations with plankton and suspended particles, including genes for uptake of algal-derived compounds, use of metabolites from reducing microzones, rapid growth and cell-density-dependent regulation. This bacterium has a physiology distinct from that of marine oligotrophs, adding a new strategy to the recognized repertoire for coping with a nutrient-poor ocean.     

Warming trends in Asia amplified by brown cloud solar absorption

Atmospheric brown clouds are mostly the result of biomass burning and fossil fuel consumption. They consist of a mixture of light-absorbing and light-scattering aerosols and therefore contribute to atmospheric solar heating and surface cooling. The sum of the two climate forcing terms-the net aerosol forcing effect-is thought to be negative and may have masked as much as half of the global warming attributed to the recent rapid rise in greenhouse gases. There is, however, at least a fourfold uncertainty in the aerosol forcing effect. Atmospheric solar heating is a significant source of the uncertainty, because current estimates are largely derived from model studies. Here we use three lightweight unmanned aerial vehicles that were vertically stacked between 0.5 and 3 km over the polluted Indian Ocean. These unmanned aerial vehicles deployed miniaturized instruments measuring aerosol concentrations, soot amount and solar fluxes. During 18 flight missions the three unmanned aerial vehicles were flown with a horizontal separation of tens of metres or less and a temporal separation of less than ten seconds, which made it possible to measure the atmospheric solar heating rates directly. We found that atmospheric brown clouds enhanced lower atmospheric solar heating by about 50 per cent. Our general circulation model simulations, which take into account the recently observed widespread occurrence of vertically extended atmospheric brown clouds over the Indian Ocean and Asia, suggest that atmospheric brown clouds contribute as much as the recent increase in anthropogenic greenhouse gases to regional lower atmospheric warming trends. We propose that the combined warming trend of 0.25 K per decade may be sufficient to account for the observed retreat of the Himalayan glaciers.     

A common haplotype of interferon regulatory factor 5 (IRF5) regulates splicing and expression and is associated with increased risk of systemic lupus erythematosus

Systemic lupus erythematosus (SLE) is a complex autoimmune disease characterized by activation of the type I interferon (IFN) pathway. Here we convincingly replicate association of the IFN regulatory factor 5 (IRF5) rs2004640 T allele with SLE in four independent case-control cohorts (P = 4.4 x 10(-16)) and by family-based transmission disequilibrium test analysis (P = 0.0006). The rs2004640 T allele creates a 5' donor splice site in an alternate exon 1 of IRF5, allowing expression of several unique IRF5 isoforms. We also identify an independent cis-acting variant associated with elevated expression of IRF5 and linked to the exon 1B splice site. Haplotypes carrying the variant associated with elevated expression and lacking the exon 1B donor site do not confer risk of SLE. Thus, a common IRF5 haplotype driving elevated expression of multiple unique isoforms of IRF5 is an important genetic risk factor for SLE, establishing a causal role for type I IFN pathway genes in human autoimmunity.     

Elevated kidney glucosyltransferase activity in genetic prediabetic mice

Summary Glucosyltransferase activity in the renal cortex of genetic diabetic KK mice was significantly increased at 40 days of age when compared to that of Swiss albino and F₁ hybrid mice. This increase in enzyme activity in the absence of glucose intolerance can be regarded as an earlier genetic marker for the diagnosis of diabetic microangiopathy.Acknowledgments. This research was supported in part by the General Research Support Grant No. RR-05398 from the General Research Support Branch, Division of Research Resources, National Institutes of Health, National Institutes of Health Training Grant No. 5-T01-AM-05617-06, Hope for Diabetics Foundation, Inc., and Pfizer Research Laboratories. Dr.R. A. Camerini-Davalos was a Career Scientist of the Health Research Council of the City of New York, and Drs.A. S. Reddi andC.A. Velasco were N. I. H. Trainees in Diabetes Mellitus during part of this study.     

Changes in activity levels of AMP deaminase and adenosine deaminase in the Indian apple snail,Pila globosa (Swainson) during starvation and aestivation stress

Summary Activity levels of AMP deaminase and adenosine deaminase have been studied in hepatopancreas, foot and mantle tissues ofPila globosa with reference to starvation and aestivation. The activity levels of both enzymes were decreased in all the tissues of aestivating snails while in starved animals AMP deaminase activity was increased, in contrast to the decreased adenosine deaminase activity.Acknowledgments. K. Srinivasa Moorthy and B. Kasi Reddy are thankful to the Department of Science and Technology, New Delhi for the financial assistance. Reprint requests should be addressed to C.S.C.     

X-ray induction of chromosome and chromatid aberrations in the same cells after treatment with hydroxyurea

Summary Vicia faba root meristem cells treated for 24 h with 1.25 mM hydroxyurea and then X-irradiated contained a large number of cells with both chromosome and chromatid aberrations. X-irradiation 4 h after release from the hydroxyurea block yielded cells with almost exclusively chromatid aberrations.Acknowledgments. This paper is based on work performed under contract with the U. S. Energy Research and Development Administration at the University of Rochester Biomedical and Environmental Research Project and has been assigned Report No. UR-3490-443. This work was also partially supported by USPHS, grants FD-00694 and GM-22680.     

ISSR markers based on GA and AG repeats reveal genetic relationship among rice varieties tolerant to drought, flood, or salinity

Drought, flood, salinity, or a combination of these limits rice production. Several rice varieties are well known for their tolerance to specific abiotic stresses. We determined genetic relationship among 12 rice varieties including 9 tolerant to drought, flood, or salinity using inter-simple sequence repeat (ISSR) markers. Based on all markers, the nine tolerant varieties formed one cluster distinct from the cluster of three control varieties. The salt-tolerant varieties were closest to two flood-tolerant varieties, and together they were distinct from the drought-tolerant varieties. (GA)₈YG was the most informative primer, showing the highest polymorphic information content (PIC) and resolving power (Rp). The drought-, flood-, and salt-tolerant varieties grouped in three distinct clusters within the group of tolerant varieties, when (GA)₈YG was used. Sabita was the only exception. The two aus varieties, Nagina22 and FR13A, were separated and grouped with the drought- and flood-tolerant varieties, respectively, but they were together in dendrograms based on other primers. The results show that ISSR markers associated with (GA)₈YG delineated the three groups of stress-tolerant varieties from each other and can be used to identify genes/new alleles associated with the three abiotic stresses in rice germplasm.     

Tissue distribution of juvenile hormone hydrolytic activity inGalleria mellonella larvae

Summary Juvenile hormone (JH) hydrolytic activity was determined in different tissues of day-4 last instar larva ofGalleria mellonella. Midgut, gonad, imaginal wing discs and fat body contain higher JH hydrolytic activity than hemolymph, while silk gland and body wall have lower activity. JH esterase activity in imaginal wing discs exhibits a pattern of age-related changes different from that of the hemolymph.We acknowledge the support of this research by the National Institutes of Health (GM 22429) and the Johnson Wax Foundation. Address to which reprint requests may be sent.     

Breeding,introgression and inheritance of delayed gland morphogenesis trait from<Emphasis Type="Italic">Gosspium bickii</Emphasis> into upland cotton germplasm

Cotton is a valuable economic crop. The cottonseedafter ginning is made up of fuzz, kernel and hull, amongwhich kernel constitutes about 50% to the seed weight.Cottonseed kernel of G. hirsutum contains about 40% ofprotein and more than 35% of cottonseed oil, which obvi-ously is a potential rich source of high quality protein andedible oil supplement[1,2]. However, the utilization of cot-tonseed is limited by the presence of gossypol and its de-rivatives in seeds of ordinary glanded cotton cult…