High-temperature shock formation of N2 and organics on primordial Titan

Titan's atmosphere is composed primarily of N2 with a little methane and other organic molecules. But theoretical models suggest that the initial form of nitrogen in Titan's atmosphere may have been NH3. We have investigated the possible importance of strong shocks produced during high-velocity impacts accompanying the late states of accretion as a method for converting NH3 to N2. To simulate the effects of an impact in Titan's atmosphere we have used the focused beam of a high-power laser, a method that has been shown to simulate shock phenomena. For mixtures of 10%, 50% and 90% NH3 (balance CH4) we obtained yields of 0.25, 1, and 6 x 10(17) molecules of N2 per joule, respectively. We also find that the yield of HCN is comparable to that for N2. In addition, several other hydrocarbons are produced, many with yields in excess of theoretical high-temperature-equilibrium models. The above yields, when combined with models of the satellite's accretion, result in a total N2 production comparable to that present in Titan's atmosphere and putative ocean.     

Pyramids or Silos: Alternative Representations of the Systems Thinking Paradigms

This paper is written from the perspective of a practitioner-researcher coming to terms with methodologically or theoretically pluralist practice. Common depictions of the relationship between the hard and soft paradigms are discussed, including the influence of the problem of paradigmatic incommensurability. The consequences of different ways in which this relationship is depicted are examined, in light of various perspectives on the relationship of Critical Systems Thinking to these paradigms. Alternative models of this relationship are provided, followed by discussion of how these models can be extended to combinations of other paradigms in different contexts.     

Defining the core Arabidopsis thaliana root microbiome

Land plants associate with a root microbiota distinct from the complex microbial community present in surrounding soil. The microbiota colonizing the rhizosphere (immediately surrounding the root) and the endophytic compartment (within the root) contribute to plant growth, productivity, carbon sequestration and phytoremediation. Colonization of the root occurs despite a sophisticated plant immune system, suggesting finely tuned discrimination of mutualists and commensals from pathogens. Genetic principles governing the derivation of host-specific endophyte communities from soil communities are poorly understood. Here we report the pyrosequencing of the bacterial 16S ribosomal RNA gene of more than 600 Arabidopsis thaliana plants to test the hypotheses that the root rhizosphere and endophytic compartment microbiota of plants grown under controlled conditions in natural soils are sufficiently dependent on the host to remain consistent across different soil types and developmental stages, and sufficiently dependent on host genotype to vary between inbred Arabidopsis accessions. We describe different bacterial communities in two geochemically distinct bulk soils and in rhizosphere and endophytic compartments prepared from roots grown in these soils. The communities in each compartment are strongly influenced by soil type. Endophytic compartments from both soils feature overlapping, low-complexity communities that are markedly enriched in Actinobacteria and specific families from other phyla, notably Proteobacteria. Some bacteria vary quantitatively between plants of different developmental stage and genotype. Our rigorous definition of an endophytic compartment microbiome should facilitate controlled dissection of plant-microbe interactions derived from complex soil communities.     

Intercellular pathways in the heart: Direct evidence for low resistance channels

Zusammenfassung In einzelne Zellen von Kaninchen-und Rattenherzen wurde Natriumfluoreszin injiziert, wobei der Farbstoff direkt von Zelle zu Zelle diffundierte, aber nicht merklich auf den Extrazellulärraum übertritt. Daraus wird gefolgert, dass zwischen den Myocardzellen Verbindungswege existieren, von wo aus Impulse weitergeleitet werden können.

---

---

Supported by grants Nos. HL 13517, GM 15991 and GM 16436 from the National Institutes of Health.     

Effect of adaptation level on maintained firing and sensitivity in receptive field center of X and Y cells

Summary Maintained firing rates of X cells and Y cells were compared at 6 adaptation levels (AL) between –2.71 log cd/m² and 2.28 log cd/m² (10 mm² pupil size). X cell maintained firing was higher at all ALs and was statistically different at medium and high ones. Changes in AL had nearly identical effects upon X and Y cell suprathreshold sensitivity to a flashing spot in the center of their receptive fields; the Weber function had a slope of 0.744 for Y cells and 0.743 for X cells. These values are not statistically different.This research is supported by Public Health Service grant no. EY 00701.     

The Drosophila immune response against Gram-negative bacteria is mediated by a peptidoglycan recognition protein

The antimicrobial defence of Drosophila relies largely on the challenge-induced synthesis of an array of potent antimicrobial peptides by the fat body. The defence against Gram-positive bacteria and natural fungal infections is mediated by the Toll signalling pathway, whereas defence against Gram-negative bacteria is dependent on the Immune deficiency (IMD) pathway. Loss-of-function mutations in either pathway reduce the resistance to corresponding infections. The link between microbial infections and activation of these two pathways has remained elusive. The Toll pathway is activated by Gram-positive bacteria through a circulating Peptidoglycan recognition protein (PGRP-SA). PGRPs appear to be highly conserved from insects to mammals, and the Drosophila genome contains 13 members. Here we report a mutation in a gene coding for a putative transmembrane protein, PGRP-LC, which reduces survival to Gram-negative sepsis but has no effect on the response to Gram-positive bacteria or natural fungal infections. By genetic epistasis, we demonstrate that PGRP-LC acts upstream of the imd gene. The data on PGRP-SA with respect to the response to Gram-positive infections, together with the present report, indicate that the PGRP family has a principal role in sensing microbial infections in Drosophila.     

Genome-wide analysis of DNA copy-number changes using cDNA microarrays.

Gene amplifications and deletions frequently contribute to tumorigenesis. Characterization of these DNA copy-number changes is important for both the basic understanding of cancer and its diagnosis. Comparative genomic hybridization (CGH) was developed to survey DNA copy-number variations across a whole genome. With CGH, differentially labelled test and reference genomic DNAs are co-hybridized to normal metaphase chromosomes, and fluorescence ratios along the length of chromosomes provide a cytogenetic representation of DNA copy-number variation. CGH, however, has a limited ( approximately 20 Mb) mapping resolution, and higher-resolution techniques, such as fluorescence in situ hybridization (FISH), are prohibitively labour-intensive on a genomic scale. Array-based CGH, in which fluorescence ratios at arrayed DNA elements provide a locus-by-locus measure of DNA copy-number variation, represents another means of achieving increased mapping resolution. Published array CGH methods have relied on large genomic clone (for example BAC) array targets and have covered only a small fraction of the human genome. cDNAs representing over 30,000 radiation-hybrid (RH)-mapped human genes provide an alternative and readily available genomic resource for mapping DNA copy-number changes. Although cDNA microarrays have been used extensively to characterize variation in human gene expression, human genomic DNA is a far more complex mixture than the mRNA representation of human cells. Therefore, analysis of DNA copy-number variation using cDNA microarrays would require a sensitivity of detection an order of magnitude greater than has been routinely reported. We describe here a cDNA microarray-based CGH method, and its application to DNA copy-number variation analysis in breast cancer cell lines and tumours. Using this assay, we were able to identify gene amplifications and deletions genome-wide and with high resolution, and compare alterations in DNA copy number and gene expression.