Geobiology of a microbial endolithic community in the Yellowstone geothermal environment

The endolithic environment, the pore space of rocks, is a ubiquitous habitat for microorganisms on the Earth and is an important target of the search for life elsewhere in the Solar System. Photosynthetic, endolithic microbial communities commonly inhabit the outer millimetres to centimetres of all rocks exposed to the Earth's surface. In the most extreme terrestrial climates, such as hot and cold deserts, endolithic microorganisms are often the main form of life. The endolithic microhabitat gives protection from intense solar radiation and desiccation, and it provides mineral nutrients, rock moisture and growth surfaces. Here we describe the discovery and identification of the constituents of an extremely acidic (pH 1) endolithic microbial community inhabiting the pore space of rocks in the geothermal environment of Yellowstone National Park, USA. Subjected to silica mineralization, such endolithic communities constitute biomarkers that can become fossilized and potentially preserved in the geological record. Remnants of these communities could serve as biosignatures and provide important clues about ancient life associated with geothermal environments on the Earth or elsewhere in the Solar System.     

Discovery of Ordovician acritarchs in Buqingshan ophiolite complex, East Kunlun Mountains and its significance

This note reports the first discovery of Middle-Late Ordovician acritarchs from the Buqingshan ophiolite complex of the southern ophiolite zone of East Kunlun. The acritarch assemblage is dominated with acanthomorphids (approx. 32%) and sphaeromorphds (approx. 63%) and contains more characteristic forms, such as Lophosphaeridium edenense, L. varum, Nothooidium sp.,? Buedingiisphaaeridium sp., Visbysphaera sp., Strophomorpha sp., etc. In addition, some tube-like fragments and tetrads, which are recognized as affinity to terrestrial plants and usual occurrence in Late Ordovician-Early Silurian strata, are preserved together with acritarchs. All the known fossil evidence indicates that the strata should be Middle-Late Ordovician in age. It not only provides paleontological proof for the existence of Ordovician ophiolite, but also challenges the usual ideas on strata composition of the studied area and the southern ophiolite zone of East Kunlun, and the models on tectonic framework and evolution of this area and the northern part of the Qinghai-Tibetan Plateau.     

Exceptional preservation of fossils in an Upper Proterozoic shale

Late Proterozoic organisms must have been diverse and widely distributed, but in general their fossil record is both taxonomically and environmentally limited. Exceptional preservation of Proterozoic fossils is not unknown, but it is usually associated with silicified carbonates from restricted peritidal or playa lake environments. We report here an exceptionally well preserved and distinctive assemblage of Late Proterozoic fossils from subtidal marine shales. In addition to the sphaeromorphic acritarchs and cyanobacterial sheaths routinely preserved in Proterozoic rocks, this assemblage includes multicellular algae ('seaweeds'), a diverse assortment of morphologically complex protistan vesicles, and probable heterotrophic bacteria. Thus, it provides one of the clearest and most taxonomically varied views of Proterozoic life yet reported.     

First fossil chimpanzee

There are thousands of fossils of hominins, but no fossil chimpanzee has yet been reported. The chimpanzee (Pan) is the closest living relative to humans. Chimpanzee populations today are confined to wooded West and central Africa, whereas most hominin fossil sites occur in the semi-arid East African Rift Valley. This situation has fuelled speculation regarding causes for the divergence of the human and chimpanzee lineages five to eight million years ago. Some investigators have invoked a shift from wooded to savannah vegetation in East Africa, driven by climate change, to explain the apparent separation between chimpanzee and human ancestral populations and the origin of the unique hominin locomotor adaptation, bipedalism. The Rift Valley itself functions as an obstacle to chimpanzee occupation in some scenarios. Here we report the first fossil chimpanzee. These fossils, from the Kapthurin Formation, Kenya, show that representatives of Pan were present in the East African Rift Valley during the Middle Pleistocene, where they were contemporary with an extinct species of Homo. Habitats suitable for both hominins and chimpanzees were clearly present there during this period, and the Rift Valley did not present an impenetrable barrier to chimpanzee occupation.     

Mortality profiles of the large herbivores from the Lingjing Xuchang Man Site, Henan Province and the early emergence of the modern human behaviors in East Asia

This paper presents the results of a detailed study of mortality profiles of the large herbivores from the Middle Palaeolithic （MP） bone assemblage of the Lingjing Xuchang Man Site, Henan Province. Based on the analysis of the crown heights of fossil teeth from this assemblage, we come to a conclusion that aurochs （Bos primigenius） and horse （Equus caballus） are the major prey species in this assemblage and the age structures of these animals can be best described as the ＂prime-dominated pattern＂. This study confirmed the well-established notions at many Middle and Upper Palaeolithic sites across Eurasia and Africa that MSA/MP foragers were fully effective in hunting aggressive prey species, particularly aurochs and horse. This find indicates that the hunting behaviors and subsistence strategies were not significantly different between MP and UP （the Upper Palaeolithic） humans in East Asia and hence suggests the early emergence of the modern human behaviors in this area.     

Preservation of black carbon in the shelf sediments of the East China Sea

Concentrations and carbon isotopic(14C,13C) compositions of black carbon(BC) were measured for three sediment cores collected from the Changjiang River estuary and the shelf of the East China Sea. BC concentrations ranged from 0.02 to 0.14 mg/g(dry weight) ,and accounted for 5% to 26% of the sedimentary total organic carbon(TOC) pool. Among the three sediment cores collected at each site,sediment from the Changjiang River estuary had relatively high BC contents compared with the sedi-ments from the East China Sea shelf,suggesting that the Changjiang River discharge played an im-portant role in the delivery of BC to the coastal region. Radiocarbon measurements indicate that the ages of BC are in the range of 6910 to 12250 years old B.P.(before present) ,that is in general,3700 to 9000 years older than the 14C ages of TOC in the sediments. These variable radiocarbon ages suggest that the BC preserved in the sediments was derived from the products of both biomass fire and fossil fuel combustion,as well as from ancient rock weathering. Based on an isotopic mass balance model,we calculated that fossil fuel combustion contributed most(60%―80%) of the BC preserved in these sediments and varied with depth and locations. The deposition and burial of this "slow-cycling" BC in the sediments of the East China Sea shelf represent a significant pool of carbon sink and could greatly influence carbon cycling in the region.     

广州地区前华夏植物群研究

广州地区晚泥盆世至早石炭世植物群计 2 3属 4 1种,以真蕨纲和种子蕨纲为主,石松纲居次,另外还有少量楔叶纲、科达纲及种子化石.按地层分布当前植物群可分为沙水岗组植物组合、龙江组植物组合及测水组植物组合.分析该植物群的组成特征,其性质属前华夏植物群     

A Chengjiang-type fossil assemblage from the Hongjingshao Formation （Cambrian Stage 3） at Chenggong,Kunming, Yunnan

A new Chengjiang-type fossil assemblage is reported herein from the lower part of the Hongjingshao Formation at Xiazhuang village of Chenggong,Kunming,Yunnan.The fossil assemblage,named as Xiazhuang fossil assemblage,yields predominantly soft-bodied fossils,including arthropods,brachiopods,priapulids,lobopods and some problematic taxa,with arthropods being the most dominant group.Preservation and composition of the fossil assemblage are very similar to the typical Chengjiang biota,which is preserved in the middle Yu’anshan Formation in the large area of eastern Yunnan.The associated trilobites demonstrate that the soft-bodied fossil assemblage belongs to the late Qiongzhusian in age(Stage 3,Cambrian),suggesting that the Hongjingshao Formation is probably a diachronous lithostratigraphic unit ranging from the upper Qiongzhusian to the lower Canglangpuan stages in eastern Yunnan.The fossil assemblage from the Xiazhuang area fills up the missing link between the typical older Chengjiang biota and the younger Malong and Guanshan biotas,making eastern Yunnan a unique area in the world to reveal the early evolutionary history of animals and palaeocommunity dynamics during the‘‘Cambrian explosion’’.     

Palaeogeography: Devonian tetrapod from western Europe

Several discoveries of Late Devonian tetrapods (limbed vertebrates) have been made during the past two decades, but each has been confined to one locality. Here we describe a tetrapod jaw of about 365 million years (Myr) old from the Famennian of Belgium, which is the first from western continental Europe. The jaw closely resembles that of Ichthyostega, a Famennian tetrapod hitherto known only from Greenland. The environment of this fossil provides information about the conditions that prevailed just before the virtual disappearance of tetrapods from the fossil record for 20 Myr.     

An early Ediacaran assemblage of macroscopic and morphologically differentiated eukaryotes

The deep-water Avalon biota (about 579 to 565 million years old) is often regarded as the earliest-known fossil assemblage with macroscopic and morphologically complex life forms. It has been proposed that the rise of the Avalon biota was triggered by the oxygenation of mid-Ediacaran deep oceans. Here we report a diverse assemblage of morphologically differentiated benthic macrofossils that were preserved largely in situ as carbonaceous compressions in black shales of the Ediacaran Lantian Formation (southern Anhui Province, South China). The Lantian biota, probably older than and taxonomically distinct from the Avalon biota, suggests that morphological diversification of macroscopic eukaryotes may have occurred in the early Ediacaran Period, perhaps shortly after the Marinoan glaciation, and that the redox history of Ediacaran oceans was more complex than previously thought.     

Preliminary notes on softbodied fossil concentrations from the Early Cambrian Chengjiang deposits

The Chengjiang fauna has played a pivotal role in our understanding of the origin and diversification of metazoans since its discovery in 1984. To date, this fauna has been documented as consisting of 121 genera with 140 species belonging to 24 phyla[1-27]. The geo- graphic distribution of the Chengjiang fauna has been expanded from Chengjiang County to eastern Yunnan Province including Haikou, Malong, Yiliang, Anning and elsewhere[25-33], with about 20 localities in to- tal[25,33]. Succes…     

Method for quantification of aerobic anoxygenic phototrophic bacteria

Accurate quantification of aerobic anoxygenic phototrophic bacteria (AAPB) is of crucial importance for estimation of the role of AAPB in the carbon cycling in marine ecosystems. The normally used method 揺pifluo-rescence microscope-infrared photography (EFM-IRP)?is, however, subject to positive errors introduced by mis-taking cyanobacteria as AAPB due to the visibility of cyanobacteria under infrared photographic conditions for AAPB. This error could be up to 30% in the coast of the East China Sea. Such bias should be avoided by either subtracting cyanobacteira from the total infrared counts or using a flowcytometer equipped with specific detectors for discrimination between cyanobacteria and AAPB.     

Direct dating of Early Upper Palaeolithic human remains from Mladec

The human fossil assemblage from the Mladec Caves in Moravia (Czech Republic) has been considered to derive from a middle or later phase of the Central European Aurignacian period on the basis of archaeological remains (a few stone artefacts and organic items such as bone points, awls, perforated teeth), despite questions of association between the human fossils and the archaeological materials and concerning the chronological implications of the limited archaeological remains. The morphological variability in the human assemblage, the presence of apparently archaic features in some specimens, and the assumed early date of the remains have made this fossil assemblage pivotal in assessments of modern human emergence within Europe. We present here the first successful direct accelerator mass spectrometry radiocarbon dating of five representative human fossils from the site. We selected sample materials from teeth and from one bone for 14C dating. The four tooth samples yielded uncalibrated ages of approximately 31,000 14C years before present, and the bone sample (an ulna) provided an uncertain more-recent age. These data are sufficient to confirm that the Mladec human assemblage is the oldest cranial, dental and postcranial assemblage of early modern humans in Europe and is therefore central to discussions of modern human emergence in the northwestern Old World and the fate of the Neanderthals.     

米仓山南缘奥陶纪地层新见

详细描述了米仓山南缘奥陶系剖面。将该区奥陶系划分为湄潭组、宝塔组和龙马溪组三个岩石地层单位,并探讨了其空间变化规律,同时根据生物组合特征建立了四个生物带,发现了Ｈｉｒｎａｎｔｉａ－Ｋｉｎｎｅｌａ组合带的存在。拟定后的龙马溪组为一跨晚奥陶世－早志留世的岩石地层单位。     

Silurian brachiopods with soft-tissue preservation

'Articulated' rhynchonelliformean brachiopods are abundant shelly fossils, but the direct fossil record of their soft parts was hitherto confined to a single pyritized trace possibly representing a lophophore. Anatomical knowledge of extinct rhynchonelliformeans relies heavily on analogies to extant species; these analogies are untested for stem-group clades. The Silurian Herefordshire (UK) Konservat-Lagerst?tte (about 425 Myr bp) yields exceptionally preserved three-dimensional fossils that provide unrivalled insights into the palaeobiology of a variety of invertebrates. The fossils are preserved as calcitic void in-fills in carbonate concretions within a volcaniclastic horizon, and are reconstructed digitally. Here we describe a stem-group rhynchonelliformean specimen from this deposit; it most probably belongs in the order Orthida. A robust ridged pedicle with distal rootlets is preserved, together with a lophophore and other soft-tissue structures. The pedicle morphology is novel, urging caution in inferring stem-group rhynchonelliformean anatomy from that of crown-group species. Smaller brachiopods are attached to the specimen; these include a probable atrypide, with pedicle and marginal setae preserved.     

Noeggerathiales as coal-forming plants in Cathaysia: conclusions from an Early Permian vegetational Pompeii in Inner Mongolia

Noeggerathiales are an extinct group of sporebearing plants of uncertain systematic position that are known from Carboniferous and Permian age Euramerican and Cathaysian floras that occurred in presentday Europe, North America, and East Asia. The order Noeggerathiales includes over 50 species of more than 20 fossil genera, but their paleoecology is not well understood yet. Previously this group had been found only in extrabasinal floras or those inhabiting clastic wetlands. Noeggerathiales have never been recorded in coal ball floras. Thus, it is up to now uncertain whether this group has contributed to the formation of coal. Recent investigations of an Early Permian peatforming flora of the Taiyuan Formation near Wuda, Inner Mongolia, which was preserved in a volcanic ash fall has provided evidence that noeggerathialean plants not only existed in the peatforming vegetation but could even be the dominant group in some areas of the coal swamp. The Noeggerathiales in this particular peatforming forest include Tingia unita, Paratingia wudensis, and a new species of Paratingia. Exceptionally well-preserved specimens indicate that these noeggerathialean plants are small trees with a canopy of compound leaves and strobili near the top of an unbranched （monocaulous） stem.     

Pyritization in the Gaojiashan Biota

The Late Sinian (Ediacaran) Gaojiashan Biota was a soft-bodied fossil-Lagersttte dominated by sub-stantial pyritized, three-dimensionally preserved tubular and conotubular fossils. Soft-tissue pyritiza-tion is extremely scarce in the fossil records, especially in the Precambrian, therefore it has very im-portant and unique significance for the study of pyritization in the Gaojiashan Biota. Early pyritization played a pivotal role in the fossil preservation and two main factors ensured the successful pyritization of the fossils, namely rapid burial and permineralization. The former was controlled by secular storm deposition, and the latter was achieved by sufficient supply of available iron from sediments. SEM data of Conotubus demonstrate two types of preservation of the tubes (defined as type A and type B, re-spectively). In type A, pyritization took place relatively earlier and completely preserved both tube wall and coelom, but no detailed structure. While in type B, pyritization took place somewhat later and pre-served the integrated tube wall, but partially the coelom. The size frequency distribution of the pyrite framboids suggests that pyritization took place in two different environments with entire different oxygen content.     

Morphological and mineralogical characterizations of oolitic iron ore in the Exi region, China

The morphological and mineralogical characterizations of a Chinese oolitic iron ore (Exi deposit) were studied by scanning electron microscopy and energy-dispersive X-ray spectroscopy in this work. It is shown that the Exi ore is mainly composed of hematite, quartz, apatite, and chlorite. The hematite is present as the oolitic layers and in the spaces between the aggregated ooids; quartz exists as granular particles in the spaces and as nucleuses in ooids; the harmful mineral, apatite, is associated with hematite as the oolitic layers, fine dissemination, granular particles in the spaces, and nucleuses in ooids. From the viewpoint of mineral beneficiation, it is hard to separate apatite and chlorite but easy to separate quartz from hematite in the Exi iron ore in recovering the iron values.     

Dinosaur eggs and dinosaur egg-bearing deposits （Upper Cretaceous） of Henan Province, China： Occurrences, palaeoenvironments, taphonomy and preservation

The Upper Cretaceous dinosaur egg-bearing deposits in Henan Province, central China are divided into three formations in ascending order: Gaogou, Majiacun and Sigou. The Gaogou Formation belongs to alluvial fan deposits containing the fossil dinosaur egg assemblage of Faveoloolithus, Dendroolithus, Dictyoolithus, Paraspheroolithus and Longiteresoolithus. The Majiacun Formation is interpreted as braided stream to meandering stream deposits with assemblage of Ovaloolithus,Paraspheroolithus,Placoolithus,Dendroolithus,Prismatoolithus, rare Youngoolithus and Nanhiungoolithus. The Sigou Formation is shallow lacustrine/palustrine to low-sinuosity river sedimentary rocks with assemblage of Macroolithus,Elongatoolithus, Ovaloolithus and Paraspheroolithus.To date, 37 oospecies, 13 oogenera and 8 oofamilies of dinosaur eggs have been distinguished. Autochthonous dinosaur eggs are preserved in the floodplain deposits, whereas allochthonous and parautochthonous dinosaur eggs are preserved in the alluvial fans. This suggests that river floodplains are the best environments for the preservation of numerous autochthonous dinosaur eggs. The preservation of most dinosaur eggs in brown to red calcic palaeosoils, muddy siltstones or mudstones suggests that the paleoclimate of the nesting area was semiarid. The presence of gray and green mudstone and coal layers, however, indicates that there existed an ephemeral subhumid climate during the middle and Late Cretaceous. It is suggested that such a climate was favorable for the development of meandering streams in a vegetated environment.     

Dietary-fat-induced taurocholic acid promotes pathobiont expansion and colitis in Il10-/- mice

The composite human microbiome of Western populations has probably changed over the past century, brought on by new environmental triggers that often have a negative impact on human health. Here we show that consumption of a diet high in saturated (milk-derived) fat, but not polyunsaturated (safflower oil) fat, changes the conditions for microbial assemblage and promotes the expansion of a low-abundance, sulphite-reducing pathobiont, Bilophila wadsworthia. This was associated with a pro-inflammatory T helper type 1 (T(H)1) immune response and increased incidence of colitis in genetically susceptible Il10(?/?), but not wild-type mice. These effects are mediated by milk-derived-fat-promoted taurine conjugation of hepatic bile acids, which increases the availability of organic sulphur used by sulphite-reducing microorganisms like B. wadsworthia. When mice were fed a low-fat diet supplemented with taurocholic acid, but not with glycocholic acid, for example, a bloom of B. wadsworthia and development of colitis were observed in Il10(?/?) mice. Together these data show that dietary fats, by promoting changes in host bile acid composition, can markedly alter conditions for gut microbial assemblage, resulting in dysbiosis that can perturb immune homeostasis. The data provide a plausible mechanistic basis by which Western-type diets high in certain saturated fats might increase the prevalence of complex immune-mediated diseases like inflammatory bowel disease in genetically susceptible hosts.