The natural selection of conservative science

Social epistemologists have argued that high risk, high reward science has an important role to play in scientific communities. Recently, though, it has also been argued that various scientific fields seem to be trending towards conservatism—the increasing production of what Kuhn (1962) might have called ‘normal science’. This paper will explore a possible explanation for this sort of trend: that the process by which scientific research groups form, grow, and dissolve might be inherently hostile to such science. In particular, I employ a paradigm developed by Smaldino and McElreath (2016) that treats a scientific community as a population undergoing selection. As will become clear, perhaps counter-intuitively this sort of process in some ways promotes high risk, high reward science. But, as I will point out, risky science is, in general, the sort of thing that is hard to repeat. While more conservative scientists will be able to train students capable of continuing their successful projects, and so create thriving lineages, successful risky science may not be the sort of thing one can easily pass on. In such cases, the structure of scientific communities selects against high risk, high rewards projects. More generally, this project makes clear that there are at least two processes to consider in thinking about how incentives shape scientific communities—the process by which individual scientists make choices about their careers and research, and the selective process governing the formation of new research groups.     

The matches,achieved by natural selection,between biological capacities and their natural loads

Natural selection tends to eliminate unutilized capacities because of their costs. Hence we ask how large are the reserve capacities by which biological capacities exceed natural loads, and how closely are related biological capacities matched to each other. Measured capacities (V_max values) of small intestinal brush-border nutrient transporters are typically around twice their natural loads (dietary intakes of their substrates); the ratio is higher for a transporter of a hyperessential nutrient. Preliminary evidence suggests matching of capacities between different steps in carbohydrate metabolism, and between the intestine, liver, kidneys, and spleen. Symmorphosis — the postulated matching of capacities to each other and to loads — is a testable hypothesis of economic design, useful in detecting and explaining cases of apparently uneconomic design.     

The matches, achieved by natural selection, between biological capacities and their natural loads.

Natural selection tends to eliminate unutilized capacities because of their costs. Hence we ask how large are the reserve capacities by which biological capacities exceed natural loads, and how closely are related biological capacities matched to each other. Measured capacities (Vmax values) of small intestinal brush-border nutrient transporters are typically around twice their natural loads (dietary intakes of their substrates); the ratio is higher for a transporter of a hyperessential nutrient. Preliminary evidence suggests matching of capacities between different steps in carbohydrate metabolism, and between the intestine, liver, kidneys, and spleen. Symmorphosis - the postulated matching of capacities to each other and to loads - is a testable hypothesis of economic design, useful in detecting and explaining cases of apparently uneconomic design.     

Voices from within: gut microbes and the CNS

Recent advances in research have greatly increased our understanding of the importance of the gut microbiota. Bacterial colonization of the intestine is critical to the normal development of many aspects of physiology such as the immune and endocrine systems. It is emerging that the influence of the gut microbiota also extends to modulation of host neural development. Furthermore, the overall balance in composition of the microbiota, together with the influence of pivotal species that induce specific responses, can modulate adult neural function, peripherally and centrally. Effects of commensal gut bacteria in adult animals include protection from the central effects of infection and inflammation as well as modulation of normal behavioral responses. There is now robust evidence that gut bacteria influence the enteric nervous system, an effect that may contribute to afferent signaling to the brain. The vagus nerve has also emerged as an important means of communicating signals from gut bacteria to the CNS. Further understanding of the mechanisms underlying microbiome–gut–brain communication will provide us with new insight into the symbiotic relationship between gut microbiota and their mammalian hosts and help us identify the potential for microbial-based therapeutic strategies to aid in the treatment of mood disorders.     

Microbiome,probiotics and neurodegenerative diseases: deciphering the gut brain axis

The gut microbiota is essential to health and has recently become a target for live bacterial cell biotherapies for various chronic diseases including metabolic syndrome, diabetes, obesity and neurodegenerative disease. Probiotic biotherapies are known to create a healthy gut environment by balancing bacterial populations and promoting their favorable metabolic action. The microbiota and its respective metabolites communicate to the host through a series of biochemical and functional links thereby affecting host homeostasis and health. In particular, the gastrointestinal tract communicates with the central nervous system through the gut–brain axis to support neuronal development and maintenance while gut dysbiosis manifests in neurological disease. There are three basic mechanisms that mediate the communication between the gut and the brain: direct neuronal communication, endocrine signaling mediators and the immune system. Together, these systems create a highly integrated molecular communication network that link systemic imbalances with the development of neurodegeneration including insulin regulation, fat metabolism, oxidative markers and immune signaling. Age is a common factor in the development of neurodegenerative disease and probiotics prevent many harmful effects of aging such as decreased neurotransmitter levels, chronic inflammation, oxidative stress and apoptosis—all factors that are proven aggravators of neurodegenerative disease. Indeed patients with Parkinson’s and Alzheimer’s diseases have a high rate of gastrointestinal comorbidities and it has be proposed by some the management of the gut microbiota may prevent or alleviate the symptoms of these chronic diseases.     

Molecular dialogue between the human gut microbiota and the host: a Lactobacillus and Bifidobacterium perspective

The human gut represents a highly complex ecosystem, which is densely colonized by a myriad of microorganisms that influence the physiology, immune function and health status of the host. Among the many members of the human gut microbiota, there are microorganisms that have co-evolved with their host and that are believed to exert health-promoting or probiotic effects. Probiotic bacteria isolated from the gut and other environments are commercially exploited, and although there is a growing list of health benefits provided by the consumption of such probiotics, their precise mechanisms of action have essentially remained elusive. Genomics approaches have provided exciting new opportunities for the identification of probiotic effector molecules that elicit specific responses to influence the physiology and immune function of their human host. In this review, we describe the current understanding of the intriguing relationships that exist between the human gut and key members of the gut microbiota such as bifidobacteria and lactobacilli, discussed here as prototypical groups of probiotic microorganisms.     

Selected aspects of the human gut microbiota

The gut microbiota represents a highly complex assembly of microbes, which interact with each other and with their host. These interactions have various implications in terms of health and disease, and this multi-author review issue will address a number of selected aspects pertaining to gut microbiota research.     

Iron pigmentation of the gut of germ-free and conventionalized guinea-pigs

Zusammenfassung Die Autoren berichten über vergleichend histologische Untersuchungen des Darmkanals zweier Meerschweinchengruppen, die unter keimfreien Bedingungen geboren und gehalten wurden. Die eine Gruppe wurde einmalig mit der Darmflora normaler Tiere infiziert. Die Konzentration von eisenhaltigem Pigment war bei den keimfreien Meerschweinchen geringer als in der infizierten Gruppe, was auf eine Rolle der Bakterien im Eisenmetabolismus hinweisen dürfte.

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Supported in part by Grant DA-49-193-61G27MD to the Albert Einstein College of Medicine by the Research and Development Command of the U.S. Army Medical Service and Grants A-5664 and K6-Gm-14,208 to the Albert Einstein College of Medicine by the National Institutes of Health.     

Carbohydrase and esterase activity in the gut of larvalCallosobruchus maculatus

Summary Carbohydrase activity has been demonstrated in homogenates of the alimentary tracts of late instar larvae ofC. maculatus:-D galactosidase, -D glucosidase and N-acetyl-D glucosaminidase activities were comparable and significantly greater than -D galactosidase,-D glucosidase and -D mannosidase. The effects of pH and substrate concentration are reported. The presence and changes in pattern of non-specific esterase activity in larval and adult gut homogenates is also described.     

Selenoproteins and oxidative stress-induced inflammatory tumorigenesis in the gut

Selenium is an essential micronutrient that is incorporated into at least 25 selenoproteins encoded by the human genome, many of which serve antioxidant functions. Because patients with inflammatory bowel disease (IBD) demonstrate nutritional deficiencies and are at increased risk for colon cancer due to heightened inflammation and oxidative stress, selenoprotein dysfunction may contribute to disease progression. Over the years, numerous studies have analyzed the effects of selenoprotein loss and shown that they are important mediators of intestinal inflammation and carcinogenesis. In particular, recent work has focused on the role of selenoprotein P (SEPP1), a major selenium transport protein which also has endogenous antioxidant function. These experiments determined SEPP1 loss altered immune and epithelial cellular function in a murine model of colitis-associated carcinoma. Here, we discuss the current knowledge of SEPP1 and selenoprotein function in the setting of IBD, colitis, and inflammatory tumorigenesis.     

From protein sequences to 3D-structures and beyond: the example of the UniProt Knowledgebase

With the dramatic increase in the volume of experimental results in every domain of life sciences, assembling pertinent data and combining information from different fields has become a challenge. Information is dispersed over numerous specialized databases and is presented in many different formats. Rapid access to experiment-based information about well-characterized proteins helps predict the function of uncharacterized proteins identified by large-scale sequencing. In this context, universal knowledgebases play essential roles in providing access to data from complementary types of experiments and serving as hubs with cross-references to many specialized databases. This review outlines how the value of experimental data is optimized by combining high-quality protein sequences with complementary experimental results, including information derived from protein 3D-structures, using as an example the UniProt knowledgebase (UniProtKB) and the tools and links provided on its website (). It also evokes precautions that are necessary for successful predictions and extrapolations.     

The insect gut: A new source of ecdysiotropic peptides

Summary Proctodaea of European corn borer (Ostrinia nubilalis) and gypsy moth (Lymantria dispar) last instars (larvae) contain prothoracicotropic factors that stimulate the prothoracic glands (PGs) of the gypsy moth to produce both ecdysone and 3-dehydroecdysone (precursors to the insect molting hormone) in a dose-dependent manner. In a separate in vivo assay, injections of proctodaeal extracts into gypsy moth larvae that were head-ligated before the release of the molt-stimulating brain hormone, PTTH, resulted in a pupal molt.     

Fine structure of the gut epithelium ofSchistosoma mansoni

Résumé L'épithélium de l'intestin deSchistosoma mansoni est un syncyte de structure pareille dans les 2 sexes. Des lamelles hérissent la surface et de nombreuses invaginations basales en fentes rayent l'épithélium de la paroi basale plasmique. On constate l'existence d'une digestion extracellulaire, ainsi que l'évidence morphologique d'une utilisation des gouttes lipides entières et des micropinosyncytes. Des procès cytoplasmiques du parenchyme s'attachent par des complexions jonctionnelles («junctional complexes») à la base de l'épithélium de l'intestin et mettent en connection les 2 systèmes. La localisation de l'activité de la phosphatase acide dans les lamelles de la paroi intestinale est précisée.