What was classical genetics?

I present an account of classical genetics to challenge theory-biased approaches in the philosophy of science. Philosophers typically assume that scientific knowledge is ultimately structured by explanatory reasoning and that research programs in well-established sciences are organized around efforts to fill out a central theory and extend its explanatory range. In the case of classical genetics, philosophers assume that the knowledge was structured by T. H. Morgan’s theory of transmission and that research throughout the later 1920s, 30s, and 40s was organized around efforts to further validate, develop, and extend this theory. I show that classical genetics was structured by an integration of explanatory reasoning (associated with the transmission theory) and investigative strategies (such as the ‘genetic approach’). The investigative strategies, which have been overlooked in historical and philosophical accounts, were as important as the so-called laws of Mendelian genetics. By the later 1920s, geneticists of the Morgan school were no longer organizing research around the goal of explaining inheritance patterns; rather, they were using genetics to investigate a range of biological phenomena that extended well beyond the explanatory domain of transmission theories. Theory-biased approaches in history and philosophy of science fail to reveal the overall structure of scientific knowledge and obscure the way it functions.     

Is biotechnology the new alchemy?

In this article I examine similarities between the science and ethics of biotechnology on the one hand, and those of alchemy on the other, and show that the understanding of nature and naturalness upon which many contemporary ethical responses to biotechnology are predicated is, in fact, significantly similar to the understanding of nature that was the foundation of the practice of alchemy. In doing so I demonstrate that the ethical issues and social responses that are currently arising from advances in the field of biotechnology are interestingly similar to those that arose in reaction to the practice and prevalence of alchemy from its inception in Europe in the mid-twelfth century until at least the early modern period. I argue that a proper conception of the ethical issues and a sensible interpretation of the power and the promise of the science of biotechnology are most likely if we understand such attitudes to nature, and to the ethical issues surrounding technological and scientific developments, in terms of an historical and cultural continuum. That is, we should regard biotechnology as merely the latest in a string of technological and scientific developments rather than, as is often alleged, as something entirely new, requiring its own special ethical response. Finally, I suggest that examining the parallels between the ethical issues generated by alchemy and by biotechnology show us that such issues are best situated and discussed within a framework of virtue ethics, as it allows us to think seriously about the relationship between art and nature and the proper role of humans in relation to their technology.     

Is glutamic acid the pyramidal tract neurotransmitter?

Applied by microiontophoresis, 1-hydroxy-3-amino-pyrrolidone-2 (HA-966) antagonized excitation by glutamic acid but not by acetylcholine of neurones in the rat cuneate nucleus. HA-966 blocked the short latency excitation of cuneate neurones following stimulation of the pyramidal tract on 28 of 40 cells (70%). Thus, glutamate or a related amino-acid may be the neurotransmitter released by pyramidal tract neurones.     

Is lysine the source of the pyridine ring in nicotine?

Zusammenfassung Gibt man L(+)-Lysin--¹⁵N oder in allen Stellungen mit¹⁴C markiertes L(+)-Lysin zu keimfreien Kulturen von abgeschnittenen Wurzeln vonNicotiana tabacum, so erzeugen die Wurzeln Nikotin, welches kleine Mengen¹⁵N oder¹⁴C enthält. Ferner enthält das Nikotin mehr¹⁵N oder¹⁴C im Pyrrolidinring als im Pyridinring. Lysin liegt daher nicht auf dem direkten biogenetischen Weg zum Nikotin.

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Research performed under the auspices of the United States Atomic Energy Commission.     

Comment on: “Causality and the arrow of classical time”, by Fritz Rohrlich

Rohrlich claims that “the problem of the arrow of time in classical dynamics has been solved”. The solution he proposes is based on the equations governing the motion of extended particles. Rohrlich claims that these equations, which must take self-interaction into account, are not invariant under time reversal. I dispute this claim, on several grounds.     

Open or closed? Dirac,Heisenberg, and the relation between classical and quantum mechanics

This paper describes a long-standing, though little known, debate between Dirac and Heisenberg over the nature of scientific methodology, theory change, and intertheoretic relations. Following Heisenberg's terminology, their disagreements can be summarized as a debate over whether the classical and quantum theories are “open” or “closed.” A close examination of this debate sheds new light on the philosophical views of two of the great founders of quantum theory.     

Reassessing the Ritz–Einstein debate on the radiation asymmetry in classical electrodynamics

We investigate the debate between Walter Ritz and Albert Einstein on the origin and nature of the radiation asymmetry. We argue that Ritz׳s views on the radiation asymmetry were far richer and nuanced than the oft-cited joint letter with Einstein (Ritz & Einstein, 1909) suggests, and that Einstein׳s views in 1909 on the asymmetry are far more ambiguous than is commonly recognized. Indeed, there is strong evidence that Einstein ultimately came to agree with Ritz that elementary radiation processes in classical electrodynamics are non-symmetric and fully retarded.     

Is the ubiquitin-proteasome system impaired in Huntington’s disease?

Ubiquitylated inclusion bodies (IBs) found in Huntington’s disease (HD) postulate an impaired ubiquitin-proteasome system. However, this hypothesis remains controversial. In vitro-generated polyglutamine aggregates failed to inhibit purified proteasomes, while filamentous huntingtin aggregates isolated from mice resulted in inhibition. However, similarly isolated IBs did not, thus suggesting that IB formation is protective by sequestering smaller inhibitory aggregates. Accordingly, proteasome-activity assays in IB-containing mouse brain homogenates did not show decreased activity. On the contrary, some of the endoproteolytic proteasome activities increased, probably due to altered subunit composition. However, activity was found decreased in postmortem human HD tissue. Finally, evidence supporting the hypothesis was found in HD cell models expressing fluorescent ubiquitin-proteasome system reporters but not in retina of SCA-7 mice with similar reporters. In summary, it seems that mutant huntingtin, probably in intermediate aggregate forms, has the potential to inhibit proteasome activity, but the global status of the system in HD brain tissue is not yet fully elucidated.     

The classical ‘Golgi apparatus’ in the vertebrate nerve cells

Zusammenfassung Der Golgi-Apparat in den Neuronen des Rückenmarks der Wirbeltiere entsteht aus Ablagerungen von Osmium oder Silber an Nissl-Körperchen und an mit ihnen verbundenen Canaliculi und Spaltsystemen. Lipoidkörperchen und/oder Mitochondrien sind in bezug auf Bildung von sekundärer Bedeutung.     

Is electromagnetic field momentum due to the flow of field energy?

Momentum and energy conservation require electromagnetic field momentum and energy to be treated as physically real, even in static fields. This motivates the conjecture that field momentum might be due to the flow of a relativistic mass density (defined as energy density divided by the square of the speed of light).This article investigates the velocity of such a mass flow and finds a conflict between two different definitions of it, both of which originally seem plausible if the flow is to be taken as real. This investigation is careful to respect the transformation rules of special relativity throughout.The paper demonstrates that the consensus definition of the flow velocity of electromagnetic energy is inconsistent with the transformation rules of special relativity, and hence is incorrect. A replacement flow velocity is derived which is completely consistent with those transformation rules.The conclusion is that these conflicting definitions of flow velocity cannot be resolved in a way that is consistent with special relativity and also allows electromagnetic field momentum density to be the result of relativistic mass flow. Though real, field momentum density cannot be explained as the flow of a relativistic mass density.As a byproduct of the study, it is also shown that there is a comoving system in which the electromagnetic energy-momentum tensor is reduced to a simple diagonal form, with two of its diagonal elements equal to the energy density and the other two diagonal elements equal to plus and minus a single parameter derived from the electromagnetic field values, a result that places constraints on possible fluid models of electromagnetism.     

Is there directional smelling?

The aim of the present study was to establish the crucial precondition for directional smelling, i.e. the ability of humans to discriminate between odorous stimuli perceived either from the right or from the left side. When the pure odorants hydrogen sulphide or vanillin were used as stimulants localization was random. On the other hand stimulation with carbon dioxide or menthol yielded identification rates of more than 96%. These results established the fact that directional orientation, considering single momentary odorous sensations, can only be assumed, when the olfactory stimulants simultaneously excite the trigeminal somatosensory system.     

Does time-symmetry imply retrocausality? How the quantum world says “Maybe”?

It has often been suggested that retrocausality offers a solution to some of the puzzles of quantum mechanics: e.g., that it allows a Lorentz-invariant explanation of Bell correlations, and other manifestations of quantum nonlocality, without action-at-a-distance. Some writers have argued that time-symmetry counts in favour of such a view, in the sense that retrocausality would be a natural consequence of a truly time-symmetric theory of the quantum world. Critics object that there is complete time-symmetry in classical physics, and yet no apparent retrocausality. Why should the quantum world be any different?This note throws some new light on these matters. I call attention to a respect in which quantum mechanics is different, under some assumptions about quantum ontology. Under these assumptions, the combination of time-symmetry without retrocausality is unavailable in quantum mechanics, for reasons intimately connected with the differences between classical and quantum physics (especially the role of discreteness in the latter). Not all interpretations of quantum mechanics share these assumptions, however, and in those that do not, time-symmetry does not entail retrocausality.     

Is the renal vasodilatation induced byβ-adrenoceptor stimulants in the dog mediated through dopamine receptor?

Summary In chloralose-anaesthetized dogs the renal vasodilator effect of isoprenaline is depressed by blockade of either dopamine or -adrenoceptors but the renal vasodilator effect of dopamine is depressed only by blockade of dopamine receptors. This suggests that the vasodilatation induced by -stimulants within the canine kidney is due in part to activation of dopamine receptors.This study was supported by the Life Insurance Medical Research Fund of Australia and New Zealand and by the Australian Kidney Foundation.We thank Mr S. Marshall for technical assistance.     

Is the EHT black hole experiment a new experiment in the guise of an old experiment?

This paper analyzes the experiment presented in 2019 by the Event Horizon Telescope (EHT) Collaboration that unveiled the first image of the supermassive black hole at the center of galaxy M87. The intended aim of the paper is to assess whether the EHT Collaboration has made an “inference to the best explanation” (IBE) to conclude that the data effectively confirm the hypothesis that the object at the center of M87 is in fact a supermassive Kerr rotating black hole. I demonstrate that the EHT Collaboration has applied an IBE. It is shown that the hypothesis that at the center of M87 there is a supermassive Kerr rotating black hole was already the best explanation at the time in which the 2017 EHT experiment was conducted. My analysis is intertwined with considerations on realist and empiricist interpretations of IBE, which are used to assess whether the conclusion that the object at the center of M87 is a Kerr rotating black hole implies holding a realist commitment with respect to such object.     

Is there any quantitative relationship between the synthesis and the breakdown of nucleic acids in living cells?

Zusammenfassung Es wurde untersucht, ob die Biosynthese der Nukleinsäuren in wachsenden Systemen mit dem Abbau von ursprünglich vorhandenen Nukleinsäuren derselben Art gekoppelt ist. Die Versuche wurden mit Bakterien (E. coli) und mit Rattenleber gemacht. Die in der Zelle vorhandenen Nukleinsäuren waren mit P³² markiert, und es wurde der Verlust an Radioaktivität in jeder der beiden Nukleinsäuretypen im Laufe des Wachstums gemessen. Die Resultate wiesen darauf hin, dass das Auftreten von neuen Nukleinsäuremolekeln in der lebenden Zelle ohne den begleitenden Abbau der alten Molekeln stattfinden kann.

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Supported in part by the Scientific Research Fund of the Ministry of Education given to the Synthetic Research Group on Nucleic Acids. The warm encouragement given to this work by Prof.J. Kamahora of this Institute is heartily acknowledged. We are further indebted to Dr.T. Miura, Department of Radiology, University of Osaka Medical School, for his help in this work.     

Is complexity a scientific concept?

Complexity science has proliferated across academic domains in recent years. A question arises as to whether any useful sense of ‘generalized complexity’ can be abstracted from the various versions of complexity to be found in the literature, and whether it could prove fruitful in a scientific sense. Most attempts at defining complexity center around two kinds of notions: Structural, and temporal or dynamic. Neither of these is able to provide a foundation for the intuitive or generalized notion when taken separately; structure is often a derivative notion, dependent on prior notions of complexity, and dynamic notions such as entropy are often indefinable. The philosophical notion of process may throw light on the tensions and contradictions within complexity. Robustness, for instance, a key quality of complexity, is quite naturally understood within a process-theoretical framework. Understanding complexity as process also helps one align complexity science with holistically oriented predecessors such as General System Theory, while allowing for the reductionist perspective of complexity. These results, however, have the further implication that it may be futile to search for general laws of complexity, or to hope that investigations of complex objects in one domain may throw light on complexity in unrelated domains.     

Is forecasting with large models informative? Assessing the role of judgement in macroeconomic forecasts

We evaluate residual projection strategies in the context of a large‐scale macro model of the euro area and smaller benchmark time‐series models. The exercises attempt to measure the accuracy of model‐based forecasts simulated both out‐of‐sample and in‐sample. Both exercises incorporate alternative residual‐projection methods, to assess the importance of unaccounted‐for breaks in forecast accuracy and off‐model judgement. Conclusions reached are that simple mechanical residual adjustments have a significant impact on forecasting accuracy irrespective of the model in use, likely due to the presence of breaks in trends in the data. The testing procedure and conclusions are applicable to a wide class of models and of general interest. Copyright © 2010 John Wiley & Sons, Ltd.