Microbial energetics applied to waste repositories

Summary Through their catalytic abilities microbes can increase rates of chemical reactions which would take a very long time to reach equilibrium under abiotic conditions. Microbes also alter the concentration and composition of chemicals in the environment, thereby creating new conditions for further biological and chemical reactions. Rates of degradation and possible indirect consequences on leaching rates in waste repositories are a function of the presence or absence of microbes and of the conditions which allow them to become catalytically active.Microbially mediated reactions are no exception to the rule that all chemical processes are basically governed by thermodynamic laws. Naturally occurring processes proceed in the direction that leads to the minimal potential energy level attained when equilibrium is reached. A continuous supply of energy to an ecosystem in the form of biochemically unstable compounds maintains non-equilibrium conditions, a prerequisite for all chemotrophic life. Energy is released as a chemical reaction progresses towards equilibrium. Microbes scavenge that portion of the free energy of reaction (G_r) which can be converted into biochemically usable forms during the chemical oxidation processes. As electrontransfer catalysts, the microorganisms mediate reactions which are thermodynamically possible thereby stimulating reaction rates. Decomposition and mineralization in systems without a continuous supply of substrates and oxidants will lead to equilibria with minimal free energy levels at which point further microbial action would cease. The differences in the free energy levels of reactions (G_r), represent the maximal energy which is available to microorganisms for maintenance and growth. How much of the released free energy will be conserved in energy-rich bonds, compounds (e.g. ATP), and chemical potentials (e.g. emf) useful for biosynthesis and biological work is characteristic for the microbes involved and the processes and metabolic routes employed.Materials whose elements are not present in the most oxidized form attainable in the oxic environment of our planet are potentially reactive. Microbial activities are associated only with chemical reactions whose free energy changes are exergonic. This should be kept in mind for all investigations related to the role of microbes in repositories or in the layout of proper waste storage conditions. Rigorous application of thermodynamic concepts to environmental microbiology allows one to develop models and design experiments which are often difficult to conceive of in complex natural systems from physiological information alone. Thermodynamic considerations also aid in selecting proper deposition conditions and in carrying out thoughtful experiments in areas related to microbial ecology of waste repositories.     

The Gaia hypothesis: A fruitful fallacy?

Summary In 1968, Lovelock proposed that the Earth's biosphere, atmosphere, oceans, and soils form a single living organism, which he called Gaia after the Greek Earth goddess. This entity constitutes a feedback system which supposedly seeks an optimal physical and chemical environment for life on Earth. Most scientists accept a weaker version of the hypothesis, that life has had a tremendous impact on the physical environment. They reject the strong version on the basis that planetary self-regulation would need foresight and planning by living organisms, which is incompatible with natural selection. Lovelock subsequently proposed a simple computer model, called Daisyworld, which shows that, under certain conditions, feedback systems without foresight can stabilize external inputs. The main value of the Gaia hypothesis lies in its holistic perspective, which is needed to avoid environmentally undesirable, cumulative effects of small decisions.     

Structural diversity and species distribution of host-defense peptides in frog skin secretions

Cationic peptides that adopt an amphipathic α-helical conformation in a membrane-mimetic environment are synthesized in the skins of many frog species. These peptides often display cytolytic activities against bacteria and fungi consistent with the idea that they play a role in the host’s system of defense against pathogenic microorganisms, but their importance in the survival strategy of the animal is not clearly understood. Despite the common misconception that antimicrobial peptides are synthesized in the skins of all anurans, the species distribution is sporadic, suggesting that their production may confer some evolutionary advantage to the organism but is not necessary for survival. The low potency of many frog skin antimicrobial peptides is consistent with the hypothesis that cutaneous symbiotic bacteria may provide the major system of defense against pathogenic microorganisms in the environment with antimicrobial peptides assuming a supplementary role in some species.     

Microbiology of subteranean waste sites

Summary Excavated repositories for radioactive waste in deep and shallow geological formations will be subject to microbial contamination; therefore, a number of groundwater environments have been examined in Europe for the presence and activity of microorganisms. Common soil bacterial isolates were found to predominate in the groundwaters. Their activity is curtailed by the oligotrophic conditions encountered. It still remains to be demonstrated whether waste and waste isolation materials such as cellulose and bitumen will provide an exogenous nutrient source for the microorganisms and whether microbial activity will compromise nuclear waste immobilisation. A further constraint to the microorganisms is the high pH near-field environment generated by cement/concrete barriers.     

纤维素分解混合菌群的筛选及其腐解稻草的研究Ⅰ纤维素分解混合菌群的筛选

为了得到强分解纤维素的复合微生物来配合秸秆还田,从不同生态环境的土壤中用选择性培养基进行了纤维素分解混合菌群的富集,得到了纤维素酶活性较高的混合菌群,该菌群以兼性厌气性细菌为主,能够在较短的时间内溶解滤纸。该菌群利用CMC-Na的能力比滤纸好。以稻草粉为底物时产酶的最佳尿素用量为0．1％,生长曲线表明该菌群在96h开始进入稳定生长期,筛选到了一个能够较好地腐解稻草的混合菌群。     

The potential significance of microbial activity in radioactive waste disposal

Summary Active microorganisms can exist in any proposed environment if the basic requirements for life are satisfied, i.e. a suitable temperature and pH, the presence of the necessary nutrients and water. If conditions are not favourable microbes may survive in a dormant state until a change will allow activity. In local pockets microenvironments may become established where microbial activity may increase leading to altered environmental conditions and to changes in the near-field, e.g. degradation and breakdown of barriers, gas generation and/or uptake and transport of nuclides.     

Plant growth stimulation by inoculation with symbiotic and associative rhizosphere microorganisms

SelectedRhizobium bacteria, arbuscular mycorrhiza-forming (AM) fungi and associative bacteria have been shown to stimulate the growth of legumes, gramineae and cruciferae in field experiments on different soil types in temperate regions. A combination of microorganisms with different metabolic capacities (N₂-fixation, P-mobilization; production of phytohormones and antibiotics) can partly surpass the effect of single inoculations, or can produce a positive effect where single inoculations are ineffective. Growth stimulation by inoculation requires microorganisms with phytoeffective metabolic characteristics and the ability to survive in the rhizosphere during the growth period. Another prerequisite is an adequate supply of plant assimilates for the production of microbial phytoeffective metabolites. Type of inoculum, method of inoculation and agricultural measures can influence the effect of the inoculation. Research is necessary to extend our knowledge both of basic principles, and about using microorganisms in practice.     

Psychrophilic and psychrotrophic microorganisms

Psychrophilic and psychrotrophic microorganisms have the ability to grow at 0 degree C. Psychrotrophic microorganisms have a maximum temperature for growth above 20 degrees C and are widespread in natural environments and in foods. Psychrophilic microorganisms have a maximum temperature for growth at 20 degrees C or below and are restricted to permanently cold habitats. This ability to grow at low temperature may be correlated with a lower temperature characteristic than that of the mesophiles, an increasing proportion of unsaturated fatty acids in the lipid phase of the cell membrane, which makes it more fluid, and a protein conformation functional at low temperature. The relatively low maximum temperature of growth for these microorganisms is often considered to be due to the thermolability of one or more essential cellular components, particularly enzymes, while some degradative activities are enhanced, resulting in an exhaustion of cell energy, a leakage of intracellular substances or complete lysis. Psychrotrophic microorganisms are well-known for their degradative activities in foods. Some are pathogenic or toxinogenic for man, animals or plants. However in natural microbial ecosystems psychrotrophic and psychrophilic microorganisms can play a large role in the biodegradation of organic matter during cold seasons.     

Mycorrhizas and root architecture

Summary Roots function dually as a support system and as the nutrient uptake organ of plants. Root morphology changes in response to the soil environment to minimize the metabolic cost of maintaining the root system, while maximizing nutrient acquisition. In response to nutrient-limiting conditions, plants may increase root fineness or specific root length (root length per gram root weight), root/shoot ratio, or root hair length and number. Each of these adaptations involves a different metabolic cost to the plant, with root hair formation as the least costly change, buffering against more costly changes in root/shoot ratio. Mycorrhizal symbiosis is another alternative to such changes. Plants with high degrees of dependence on the symbiosis have coarser root systems, less plasticity in root/shoot ratio, and develop fewer root hairs in low-fertility soils. In nutrient-limited soils, plants highly dependent on mycorrhiza reduce metabolic cost by developing an even more coarse or magnolioid root system, which is less able to obtain nutrients and thus creates a greater dependence of the plant on the symbiosis. These subtle changes in root architecture may be induced by mycorrhizal fungi and can be quantified using topological analysis of rooting patterns. The ability of mycorrhizal fungi to elicit change in root architecture appears to be limited to plant species which are highly dependent upon mycorrhizal symbiosis.     

The effect of adhesion on survival and growth of microorganisms

Summary Adhesion of microorganisms to solid surfaces or water/air interfaces can significantly influence cellular metabolic activity, development and viability. Attachment is of advantage particularly for organisms growing under oligotrophic or otherwise extreme conditions. However, the ability to detach and migrate is of vital importance when prevailing conditions become too harsh or in situations of population explosion.Adhesion can cause alterations in the physical and chemical properties of substratum surfaces as well, by means of degradation, aggregation, emulsification etc.     

Do cells think?

A microorganism has to adapt to changing environmental conditions in order to survive. Cells could follow one of two basic strategies to address such environmental fluctuations. On the one hand, cells could anticipate a fluctuating environment by spontaneously generating a phenotypically diverse population of cells, with each subpopulation exhibiting different capacities to flourish in the different conditions. Alternatively, cells could sense changes in the surrounding conditions – such as temperature, nutritional availability or the presence of other individuals – and modify their behavior to provide an appropriate response to that information. As we describe, examples of both strategies abound among different microorganisms. Moreover, successful application of either strategy requires a level of memory and information processing that has not been normally associated with single cells, suggesting that such organisms do in fact have the capacity to ‘think’. Received 3 January 2007; accepted 4 April 2007     

Vegetative Entwicklung und Fertilität einiger annueller Pflanzenarten unter dem Einfluss verschiedener konstanter Temperaturen

Summary The influence of a series of constant temperatures on some annual plant species was studied in otherwise constant conditions. There are big differences in the behaviour of the species. But also within a species the properties studied can have different optimal temperatures. These differences are especially characteristic in some cases for the properties of fertility and of the vegetative growth. One species, for instance, can under certain conditions be very high and can even have numerous big flowers, but the plants can be simultaneously entirely sterile.     

Evaluating the fate of genetically modified microorganisms in the environment: Are they inherently less fit?

Genetically modified microorganisms hold great promise for environmental applications. Nonetheless, some may have unintended adverse effects. Of particular concern for risk assessment is the simple fact that microorganisms are self-replicating entities, so that it may be impossible to control an adverse effect simply by discontinuing further releases of the organism. It has been suggested, however, that genetically modified microorganisms will be poor competitors and therefore unable to persist in the wild due to energetic inefficiency, disruption of genomic coadaptation, or domestication. Many studies support the hypothesis that genetically modified microorganisms are less fit than their progenitors, but there are a few noteworthy counter-examples in which genetic modifications unexpectedly enhance competitive fitness. Furthermore, subsequent evolution may eliminate the maladaptive effects of some genes, increasing the likelihood that a modified organism or its engineered genes will persist. Evaluating the likelihood that a genetically modified microorganism or its engineered genes will persist is a complex ecological and evolutionary problem. Therefore, an efficient regulatory framework would require such evaluations only when there are plausible scenarios for significant adverse environmental effects.     

Anthropogenic and natural acidification in terrestrial ecosystems

Conclusions The total proton load found in these ecosystems exceeds by far the known rates of buffering in soils by silicate weathering and release of basic cations (see above).Under the present proton load most forest soils will therefore acidify and besides losses of nutrients the occurrence of possible toxic ions in the soil unavoidable (Al-buffer range)^{20, 21}.The proportion of the total proton load of the soil that is represented by the internal production emphasizes the importance of acid deposition as main cause of soil acidification and destabilization of forest ecosystems under Central European conditions.     

Plant uptake of aluminium from calcareous soils

Concentrations of Al in leaf tissue of plants growing on limestone soils (pH ca. 8) are similar to, or do not deviate much from, concentrations in plants growing on acid silicate soils. Aluminium concentrations in the topsoil solution are at least one order of magnitude lower in limestone than in acid silicate soils. Plants seem to absorb Al quite efficiently under moderately alkaline soil conditions. Possible mechanisms for this are discussed.     

Photoperiodically induced delayed insect metamorphosis: a larval oligopause inDiatraea saccharalis

Summary Sugarcane borers enter a state of delayed metamorphosis when exposed to a 12-h photophase at 21°C. Larval feeding, growth, and molting continues but pupation is suppressed under these conditions.     

Epithelial antimicrobial peptides: innate local host response elements

Multicellular organisms have to survive in an environment laden with numerous microorganisms, which represent a potential hazard to life. Different strategies have been developed to ward off infections by preventing microorganisms from entering surfaces and by preventing the attack of microorganisms that have already entered the epithelia. Therefore, it is not surprising that epithelia are equipped with various antimicrobial substances that act rapidly to kill a broad range of microorganisms. This review summarizes our present knowledge about epithelial peptide antibiotics produced in plants, invertebrates, and vertebrates including humans. There is now strong evidence that in addition to constitutively secreted peptide antibiotics, others are induced upon contact with microorganisms or by proinflammatory cytokines. beta-Defensins represent one family of vertebrate antimicrobial peptides, members of which are inducible and have recently been identified in humans. The defensin-characteristic local expression pattern may indicate that specialized surfaces express a characteristic surface antimicrobial peptide pattern that might define the characteristic microflora as well as the density of microorganisms present on the surface.     

The starvation-survival state of microorganisms in nature and its relationship to the bioavailable energy

Summary Although one can measure the organic matter in various ecosystems in terms of organic carbon, this measurement does not indicate what portion of the organic carbon is bioavailable to the microorganisms. Most organic matter is recalcitrant and, therefore, most microorganisms do not have sufficient energy to carry on their metabolism for growth and reproduction. As a result, many species of bacteria will form ultramicrocells and enter a physiological state known as starvation-survival. This physiological state results in metabolic arrest which permits the organisms to survive for long periods of time without sufficient energy for growth and reproduction.Technical paper No. 8920, Oregon Agricultural Experiment Station.     

Quasi-rational expectations: Experimental evidence

The theory of quasi-rational expectations was tested under the controlled conditions of the economics laboratory. Five experiments were conducted with a variety of stochastic processes. In each experiment, subjects produced one-step-ahead forecasts of the variable generated by a Monte Carlo process. Comparisons of the performance of an aggregate of subjects' forecasts versus an ARIMA model showed that for relatively simple series (such as those generated by autoregressive processes of first or second order) the aggregate forecast was indistinguishable from that of the model. These results lend support to the theory that forecasts from an ARIMA model can serve as substitutes for aggregate expectations in macroeconomic policy models under some conditions.