PRV广东株gE基因去信号肽片段的克隆与序列测定

根据伪狂犬病病毒（PRV）Rice株gE基因的序列设计并合成了1对引物,以我国PRV地方毒株广东株的基因组DNA为模板,通过PCR方法获得了一大小约1.6kb的DNA片段,并将其克隆到pMD18-T载体上进行测序,序列测定结果显示,该片段长1665bp,编码555个氨基酸,与PRV Rice株gE基因的核苷酸序列同源性为97.7%,氨基酸序列同源性为95.9%。     

慢生型大豆根瘤菌染色体的16kb EcoRⅠ DNA片段的亚克隆测序分析

亚克隆测序分析发现，在Bradyrhizobium japonicum的GX201菌株染色体的16kb EcoR I DNA区段上含有一个与putA基因同源的基因的ORF 3054（Open Reading Frame)，该基因ORF长3054bp，在核苷酸水平上与已报道的putA基因有94％一致性，其推断性的编码产物在氨基酸水平上与putA编码产物脯氨酸脱氢酶（ProDH)有95％一致性，利用Tn5gusA5诱变的方法获得了该同源基因的标记置换突变体，该突变体在液体培养基（YMA）中的生长速率比野生菌株慢。     

三种ARS片段对水稻部分酶解小细胞团转化频率的影响

ＡＲＳ２,ＡＲＳ７,ＲＳ８是从水稻珍汕９７Ａ不育系统ＤＮＡ中的克隆的一组在酵母细胞中能直始ＤＮＡ复制的片段。其中ＡＲＳ８是单考贝而ＡＲＳ２,ＡＲＳ７却是高度重复顺序。将带有ＡＲＳ２,ＡＲＳ７,ＡＲＳ８的质粒用低压脉冲电泳法导入水稻部分酶解小细胞团中,经浅层培养,铺板,获得愈伤组织。     

Cloning and analysis of the antagonistic related genes of <Emphasis Type="Italic">Enterobacter cloacae</Emphasis> B8

To understand the antagonistic mechanism of the broad spectrum antagonistic Enterobacter cloacae B8,Tn5 transposon-mediated mutagenesis is performed using suicide plasmid pZJ25. Two mutant strains that lost antagonistic character are isolated. Tagging with kanr gene on Tn5,an antagonistic related DNA fragment, the F fragment, right of the Tn5 insertion site is cloned in a plasmid named pTLF,from one of the mutant strains B8F. The 733 bp F fragment is then sequenced after subcloning. Genomic DNA of the original B8 strain is isolated, digested with Pst I and ligated to Pst I cassette. DNA fragments left and right of the F fragment are amplified from the Pst I cassette library using cassette primer and specific primers designed according to known sequence. 1106 bp sequence left of the F fragment and 664bp sequence right of the F fragment are finally obtained. Bioinformatics analysis shows that the contig assembled from the sequences of the cloned antagonistic related DNA fragments of B8 encodes three ORFs and is homogeneous to admM,admN and admO genes of Pantoea agglomerans andrimid biosynthetic gene cluster (AY192157). The ORF, named anrF gene which encodes a polyketide synthase, knocked out by Tn5 insertion, is a homology of admM and the insertion site of Tn5 is at 214 bp upstream of the stop codon. It is concluded that the anrF gene is a gene related to the antagonistic activity of E. cloacae B8, and speculated that the antagonistic substance produced by B8 is an andrimid.     

钩端螺旋体LAg42膜蛋白基因的克隆及原核表达

分别以问号状赖型钩体017株,56601株及双曲钩体PatocI株基因组为模板,PCR扩增目的基因lag42与质粒pET32a(＋)构建重组原核表达质粒,在大肠杆菌BL21中诱导表达.结果显示不同毒力赖型钩体均能扩增出约1100 bp的片段,而PatocI株则未能扩增出目的片段;不同赖型钩体的lag42基因的同源性很高.融合表达质粒pET-lag42转化大肠杆菌BL21后,经IPTG诱导,表达出约62kDa的重组融合蛋白,用Western blotting证实其有良好的抗原性,纯化蛋白免疫新西兰大白兔,获     

Engineering Deinococcus radiodurans into biosensor to monitor radioactivity and genotoxicity in environment

Based on a genetically modified radioresistant bacteria Deinococcus radiodurans, we constructed a real time whole cell biosensor to monitor radioactivity and genotoxicity in highly radioactive environ-ment. The enhanced green fluorescence protein (eGFP) was fused to the promoter of the crucial DNA damage-inducible recA gene from D. radiodurans, and the consequent DNA fragment (PrecA-egfp) car-ried by plasmid was introduced into D. radiodurans R1 strain to obtain the biosensor strain DRG300. This engineered strain can express eGFP protein and generate fluorescence in induction of the recA gene promoter. Based on the correlation between fluorescence intensity and protein expression level in live D. radiodurans cells, we discovered that the fluorescence induction of strain DRG300 responds in a remarkable dose-dependent manner when treated with DNA damage sources such as gamma radiation and mitomycin C. It is encouraging to find the widely detective range and high sensitivity of this re-constructed strain comparing with other whole cell biosensors in former reports. These results suggest that the strain DRG300 is a potential whole cell biosensor to construct a detective system to monitor the biological hazards of radioactive and toxic pollutants in environment in real time.     

Recovery of DNA from agarose gel with home-made silica milk

An usefulness of silica milk made with waste ultraviolet light tube for recovery of DNA fragment from agarose gel was represented. The glass milk is a water suspension of 50% fine silica powder prepared by grinding the crushed waste ultraviolet light tube with a porcelain mortar. It was showed that one microliter of the glass milk could bind more than 1 μg of DNA fragment, and DNA fragment in length from 125 bp to 23 kb could be efficiently recovered from agarose gel. The bound DNA could be eluted from the particle of SiO₂ in the glass milk with a yield of about 60%–80%. The eluted DNA could be used in all manipulations in molecular cloning. Biography: Wang Zhuo-hua (1977-), female, M. D, research direction: genetic engineering.     

人巨细胞病毒临床低传代病毒株UL97 基因的克隆与分析

分离人巨细胞病毒（HCMV）临床低传代GZ02病毒株,并根据GenBank提供的实验室标准病毒株HCMV AD169磷酸转移酶基因UL97 DNA序列及有关文献设计引物,从HCMV GZ02病毒株基因组DNA中通过PCR扩增UL97基因,并克隆至pGEM3Z质粒载体．重组质粒经测序鉴定,发现HCM VGZ02病毒株UL97基因序列保守区域与HCMV AD169 UL97长度完全一致,但发生G205A、G761A、T823C、T1173C、T1282C、T1334C、T2106C等7个位点的碱基突变,涉及到编码氨基酸E69K,S275P,C428R和F445S位点发生改变。     

Cloning and evolutionary analysis of cyclin B gene introns in cyprinids with different ploidy levels

Partial fragments of the cyclin B gene from triploid, tetraploid, and pentaploid hybrids of red crucian carp × blunt snout bream, blunt snout bream, grass carp, silver carp, and bighead carp were amplified. One DNA fragment was amplified from the blunt snout bream, grass carp, silver carp, and bighead carp (750, 950, 720, and 720 bp, respectively). Two fragments (1200 and 900 bp) were amplified from the red crucian carp, common carp, and allotetraploids. The triploid and pentaploid hybrids yielded three DNA fragments (1200, 900, and 750 bp). The 1200 bp fragment of the allotetraploid crucian carp, triploid, tetraploid, pentaploid hybrids of red crucian carp × blunt snout bream shared 99.5%, 98.9%, 99.5%, and 88.7% homology, respectively, with the maternal DNA. The 900 bp fragment shared 97.5%, 94.6%, 94.2%, and 89.9% homology, respectively. Our results suggest that inheritance is maternally dominated. Furthermore, we observed preferential elimination of the paternal sequences in the allotetraploid hybrids. Based on these sequence analyses we constructed a phylogenetic tree to explain the relationships among the different ploidy levels.     

鸡腺病毒内蒙古分离株六邻体蛋白基因片段的合成和分子克隆

根据鸡１０型腺病毒以及人２、５、４０、４１型腺病毒、牛３型、鼠１型腺病毒六邻体蛋白基因序列，选择保守区，设计和合成一对引物，以鸡腺病毒内蒙古分离株基因组ＤＮＡ为模板，进行聚合酶链反应（ＰＣＲ）扩增得到预期大小的０．５５ｋｂＤＮＡ片段．将此ＤＮＡ片段克隆于ｐＵＣ１９的ＳｍａＩ位点，筛选重组质粒，进行限制酶切分析和ＰＣＲ检测，得到含有六邻体蛋白基因片段的重组质粒，为进一步开展此病毒分子生物学研究和分子生物学诊断技术的建立创造了条件     

新疆绵羊种布鲁氏菌GroEL基因的克隆及序列分析

参考牛种布鲁氏菌的GroEL（热休克蛋白）基因设计引物,扩增出新疆绵羊种布鲁氏菌GroEL基因片段,将其片段克隆到T载体上测序。结果表明：新疆源布鲁氏菌GroEL基因片段长1641bp,编码546个氨基酸,与羊种（B．melitensis）、猪种（B．suis）以及牛种（B．abortus）GroEL基因的核苷酸序列同源性分别为99．88％、99．82％、99．88％,推导的氨基酸序列同源性在99％以上,显示了很强的保守性。     

Chromosome microdissection by laser microbeam, chromosomal fragment isolation and amplificationin vitro in barley (Hordeum vulgare L.)

A method for microdissection, isolation and amplification of plant chromosomal fragments using laser microbeam and a glass microneedle was established. Firstly, 7H chromosome of barley (Hordeum vulgare L.) was dissected by Nd: YAG laserbeam with suitable parameters and the fragment comprising a satellite was isolated with a glass microneedle which was fixed on a micromanipulator. Then, the chromosomal fragment DNA was amplified by LA_PCR (linker adaptor PCR) for two rounds. The size of the DNA fragments of PCR products varied from 500-3 000 bp and the PCR products originated from the genome of barley were verified by Southern hybridization. Compared with previous reports, there are some advantages in this research. The performance is easier, the dissection is more precise and the cost is low. It also permits efficient amplification with only one single chromosome fragment. Laser microbeam_glass microneedle method may be useful in the microdissection of special chromosome regions, especially in plants with middle or small chromosomes.     

Isolation and characterization of a <Emphasis Type="Italic">Sinorhizobium fredii</Emphasis> mutant that cannot utilize proline as the sole carbon and nitrogen source

Sinorhizobium fredii strain HN01 can use proline as the sole carbon and nitrogen source. A mutant strain GXHN100 unable to catabolize proline was screened from 6000 Tn5gusA5 random insertional mutants of S.fredii strain HN01. Sequencing analysis showed that an open reading frame, named pmrA (proline metabolic relative), was inserted by the Tn5gusA5. A positive clone, namedp GXHN100 which containing 3.3kb foreign DNA fragment of S.fredii strain HN01, was isolated from a partial gene library of S.fredii HN01 by colony in situ hybridization. Sequence analysis showed that pGXHN100 contained the entire pmrA gene. The 3.3kb DNA fragment of pGXHN100 was cloned into a broad-host-range cosmid vector pLAFR3 to form plasmid pGXHN200 which was subsequently introduced into GXHN100 to form a complemented strain GXHN200. Plant test showed that GXHN100 was effective and no obvious changes in nitrogenase activity comparing with parental strain. But GXHN100 nodulated 2 days later on soybean and its nodulation efficiency and competitiveness were decreased.The complemented strain GXHN200 restored the nodulation efficiency and competitiveness of GXHN100 to the wild type.     

中蜂囊状幼虫病病毒部分结构蛋白基因的克隆及序列分析

根据小ＲＮＡ 病毒科（ Ｐｉｃｏｒｎａｖｉｒｉｄａｅ） 中病毒ＲＮＡ 所具有的结构特征, 采用ｍＲＮＡｃａｐｔｕｒｅ ｋｉｔ 提取纯化中蜂囊状幼虫病病毒（Ｃｈｉｎｅｓｅｓｃａｂｒｏｏｄ ｖｉｒｕｓ ＣＳＢＶ） 的ＲＮＡ, 并以之为ｃＤＮＡ合成的模板． 依据小ＲＮＡ病毒科中的脊髓灰质炎病毒结构蛋白基因序列设计了一对引物ＶＰ５和ＶＰ３ , 通过ＰＣＲ 扩增获得预期大小约为１ １００ ｂｐ的ＤＮＡ 片段, 将此片段克隆到ｐＧＥＭＴｅａｓｙ载体上并直接测序． 序列分析表明, 该片段为中蜂囊状幼虫病病毒部分结构蛋白基因, 与意蜂幼虫囊状病病毒结构蛋白基因序列的同源性为８６－８ ％ , 与之对应氨基酸序列的同源性高达９３－４ ％ ． 该病毒株为一种新型的蜜蜂囊状幼虫病病毒株     

利用CODEHOP设计简并引物克隆红色红曲霉丝氨酸羧肽酶基因片段和序列分析

利用CODEHOP(Consensus-Degenerate Hybrid Oligonucleotide Primers)软件设计了红色红曲霉丝氨酸羧肽酶基因片段的简并引物,选取1对简并引物进行逆转录-聚合酶链式反应(RT-PCR),得到348 bp的聚合酶链式反应产物,经pMD18-T载体克隆转化至大肠杆菌DH5α中,测序后进行BLASTX比对,发现此DNA产物与其他丝氨酸羧肽酶基因序列有相似性,推断所克隆的产物即为红色红曲霉的丝氨酸羧肽酶基因片段.     

Engineering <Emphasis Type="Italic">Deinococcus radiodurans</Emphasis> into biosensor to monitor radioactivity and genotoxicity in environment

Based on a genetically modified radioresistant bacteria Deinococcus radiodurans, we constructed a real time whole cell biosensor to monitor radioactivity and genotoxicity in highly radioactive environment. The enhanced green fluorescence protein （eGFP） was fused to the promoter of the crucial DNA damage-inducible recA gene from D. radiodurans, and the consequent DNA fragment （PrecA-egfp） carried by plasmid was introduced into D. radiodurans R1 strain to obtain the biosensor strain DRG300. This engineered strain can express eGFP protein and generate fluorescence in induction of the recA gene promoter. Based on the correlation between fluorescence intensity and protein expression level in live D. radiodurans cells, we discovered that the fluorescence induction of strain DRG300 responds in a remarkable dose-dependent manner when treated with DNA damage sources such as gamma radiation and mitomycin C. It is encouraging to find the widely detective range and high sensitivity of this reconstructed strain comparing with other whole cell biosensors in former reports. These results suggest that the strain DRG300 is a potential whole cell biosensor to construct a detective system to monitor the biological hazards of radioactive and toxic pollutants in environment in real time.     

D-海因酶基因重组子的构建和酶的表达活性

以中华根瘤菌(Sinorhizobium morelense)SS—ori总DNA为模板，用PCR法扩增D-海因酶基因，分别克隆到5种不同的载体，并转入5种不同的Escherichia coli菌株，获得25株工程菌，进行培养与诱导表达．细胞经超声处理后，通过SDS—PAGE和酶活性两种指标比较表达产物．结果表明，除3株工程菌具有D-海因酶活性外，其它均为无酶活性的不溶性包涵体，包涵体经变性、复性后，可部分获得有活性的D-海因酶，其比活为0．90U／mg，复性率约为20％．此外，对包涵体产生的原因及可能解决办法也进行了讨论．     

鲫鱼肠道温和气单胞菌的分离鉴定及药敏试验

从鲫鱼肠道分离纯化获得一株细菌,编号为XA-2,对其进行形态观察,并对理化特性、16S rDNA克隆测序及系统发育进化树构建等研究．结果表明,XA-2菌株为革兰氏阴性短杆菌,可发酵葡萄糖产气;进一步采用 PCR方法克隆16S rDNA序列,测得长度为1508 bp ;对系统发育进化树分析,发现XA-2菌株与温和气单胞菌（Aero-monas sobria）模式菌株NCIMB 12065的亲缘关系最近,同源性达99.73％,从而鉴定XA-2菌株为温和气单胞菌．采用27种抗生素进行药敏试验,结果显示该菌株对头孢噻吩、头孢噻肟、头孢克肟、头孢哌酮、新霉素、诺氟沙星、复方新诺明等药物敏感,对先锋霉素Ⅳ、阿莫西林、庆大霉素、卡那霉素、红霉素等药物不敏感．     

Alternative split sites for fragment complementation,and glyphosate function as extra ligand and stabilizer for the AroA enzyme complexes

Protein reconstitution analysis can be useful for studies on protein evolution, protein folding and macromolecular assembly. AroA is a key enzyme in the pathway toward the synthesis of aromatic amino acids in microorganisms and plants, and is the target of the herbicide glyphosate. Our previous study showed that functional AroA enzyme from Escherichia coli could be reconstituted from two ~220-amino acid fragments of the protein. In this study, we explored this fragment complementation of AroA. Through a sys...