Holographic QSRR of polychlorinated dibenzofurans

A new molecular representation, molecula rhologram, is employed to investigate the quantitative relationships between gas chromatographic retention indices (GC-RI) and molecular structures of polychlorinated dibenzofurans (PCDFs). Together with application of partial least squares (PLS) regression, the quantitative structure-retention relationship (QSRR) model is constructed for GC-RI of 135 PCDFs. This new QSRR model presents high statistical quality and predictive value with crossvalidation correlation coefficient q2Loo values of 0.998, and non-crossvalidationcorrelation coefficient r2 of 0.998. 100 PCDFs are selected randomly as training set and the rest as testing set. The resuit of PLS regressive analysis of training set yields r^2 of 0.998 and q2Loo of 0.997. The GC-RIs of testing set are predicted, and the correlation equation indicates that the model based on training set has excellent ability to predict the GC-RIs of PCDFs in testing set.     

A novel molecular distance edge vector as applied to chemical modeling of quantitative structureretention relationships： Various gas chromatographic retention behaviors of polychlorinated dibenzofurans on different polarityvarying stationary phases

Based on the identical group as a pseudo atom instead of a typical atom, a novel modified molecular distance-edge （MDE） vector μ was developed in our laboratory to characterize chemical structure of polychlorinated dibenzofurans （PCDFs） congeners and/or isomers. Quantitative structure-retention relationships （QSRRs） between the new VMDE parameters and gas chromatographic （GC） retention behavior of PCDFs were then generated by multiple linear regression （MLR） method for non-polar, moderately polar, and polar stationary phases. Four excellent models with high correlation coefficients, R=0.984--0.995, were proposed for non-polar columns （DB-5, SE-54, OV-101）. For the moderately polar columns （OV-1701）, the correlation coefficient of the developed good model is only 0.958. For the polar columns （SP-2300）, the QSRR model is poor with R=0.884. Then cross validation with leave-one out of procedure （CV） is performed in high correlation with the non-polar （Rcv=9920.974） and weakly polar （Rcv=921） columns and in little correlation （Rcv=0.834） with the polar columns. These results show that the new μ vector is suitable for describing the retention behaviors of PCDFs on non-polar and moderately polar stationary phases and not for the various gas chromatographic retention behaviors of PCDFs on the different polarity-varying stationary phases.     

阿皮松M负载硅烷类化合物的气相色谱保留机理研究(英文)

利用AM1法全优化计算了一系列硅烷类化合物,并将获得的8种量化参数与其在阿皮松M上的气相(GC)Kovats指数进行多元线性回归(MLR),成功建立了QSRR模型,该模型的预测值与实验值基本吻合.     

用连接性指数研究苯砜基环烷酸酯的容量因子

运用Matlab程序计算了28种苯砜基环烷酸酯类化合物的8种价分子连接性指数,并对这些化合物进行定量结构色谱保留相关性(QSRR)分析。通过多元统计的逐步回归建立了QSRR模型,其计算误差应接近实验误差。该模型经逐一剔除法检验具有良好的稳定性、可靠性及预测能力。     

硫苷反相色谱分离保留机理的量子化学研究

应用量子化学中的AM1法,从分子的电子结构水平探讨硫苷的色谱保留机理,借助多元线性回归方法建立了硫苷在C18上的定量结构-色谱保留关系(QSRR)相关方程.结果表明,硫苷与固定相相互作用的体系总能量,分子偶极距,流动相氢键作用与保留值之间具有一定的相关性.     

Influence of Self-Assembly and Solvent Polarity on Fluorescence Properties of Hydrophobic Organic Cations Based on Anthracene Skeleton

Fluorescence mode is influenced by the substituents, the polarity of the solvent, the steric factor and even the aggregation state of molecules in solvent under the testing environment. By comparing the fluorescent behavior of three anthracene derivatives, we observe that the hydrophobic interaction and steric effect in structures reduce fluorescence intensity, quantum yield and fluorescence lifetime. The emitting mode of two amphiphilic salts changes from aggregation emission in weak polar solvent to monomer emission in strong polar solvent and gives the similar variety in mixed solvent.     

A new drug carrier: Magnetite nanoparticles coated with amphiphilic block copolymer

This paper reports on the synthesis and characterization of 4 nm magnetite nanoparticles coated with amphiphilic block copolymers of poly(ethyl methacrylate)-b-poly(2-hydroxyethyl methacrylate) (PEMA- b-PHEMA) by surface-initiated atom transfer radical polymerization (ATRP), which can act as new po-tential carriers for hydrophobic targeted drug delivery. Vibrating sample magnetometer analysis indi-cated that the magnetite nanoparticles were superparamagnetic at room temperature. Thermogravim-etric analysis (TGA) was applied to studying the property of surface of magnetite nanoparticles, and the surface density of macromolecules was calculated. The grafting density of oleic acid, BrMPA and PEMA was 5.8, 3.9, 0.16 chain/nm2 respectively, which indicates that the initiation efficiency decreases due to the influence of large space of oleic acid molecules. In vitro progesterone and (-)-isoproterenol hy-drochloride release in phosphate buffered saline (PBS) at pH 7.0 and 37℃ was conducted in order to demonstrate the function of drug loading and release. The results showed that the amount of drug carried into the core-shell Fe₃O₄@PEMA-b-PHEMA depends on the length of hydrophobic segment of block copolymer. The release of progesterone (37% after 22 h in our previous work) was compared with the release of (-)-isoproterenol hydrochloride (80% after 50 min), demonstrating that the strong hy-drophobic interaction between hydrophobic segment and drug can effectively control the release of hydrophobic drugs.     

遗传算法在烷基硝基苯酚类化合物的QSRR中的应用

       利用分子力学和量子化学方法计算出烷基硝基苯酚类化合物的分子结构描述参数,用遗传算法建立化合物在不同极性色谱柱上的QSRR模型。烷基硝基苯酚类化合物在不同极性色谱柱上的气相色谱保留指数与其分子结构描述参数之间具有较好的线性关系。所建立的QSRR模型与多元线性回归方法建立的模型相比,预测此类化合物的色谱保留值时具有更好的稳定性和准确性。     

HLA-A*0201限制性CTL表位肽的分子力场分析

运用比较分子力场(CoMFA)和比较相似性指数分析(CoMSIA)方法研究了50个HLA-A* 0201限制性CTL表位九肽结构与亲和性间的关系,另外15个表位九肽作为预测集用于检验模型的预测能力。结果表明,采用CoMSIA得到的构效关系模型(q2 =0.608,r2 =0.987,F=440.4,SD=0. 111)要明显优于采用CoMFA得到的构效关系模型。在CoMSIA计算中,当引入疏水场时,三维构效关系模型得到明显改善,通过该三维构效关系模型,可较精确地估算预测集中15个CTL表位肽与HLA-A* 0201间的亲和力(r2pred=0. 703,SD=0. 368)。通过分析分子场等势面图在空间的分布,可以观察到表位肽分子周围的立体及疏水特征对表位肽与HLA-A* 0201间结合亲和力的影响,从而为进一步对CTL表位肽进行结构改造并基于此进行治疗性疫苗分子设计提供理论基础。     

基于遗传策略的DVD在线租赁模型优化

针对DVD在线租赁问题进行了研究．建立了刻画该问题的0-1整数规划（BIP）模型;在考虑到求解的精确性和即时性后,设计了相应的遗传算子,构造了基于遗传策略的求解算法,并将其与另两种求解方法进行比较,验证了该算法的可行性和有效性．     

生姜乙醇提取物色谱保留的拓扑研究

基于Kier连接性指数(mXvt)建立Kier逆指数(mFwt),使用最佳变量子集回归构建了生姜乙醇提取物中22种化学成分的气相色谱保留时间(Tm)的三元数学模型,其传统相关系数(R2)为0.978,它的计算值与相应实验值基本吻合.经变异膨胀因子(VIF)分析,该模型具有高度稳健性.结果表明,Kier逆指数对有机物气相...     

地棘蛙素类似物的CoMFA和CoMSIA的3D-QSAR研究

采用比较分子力场 (CoMFA)分析法和比较分子相似性指标场(CoMSIA)分析法,进行偏最小二乘法(PLS)分析,建立了地棘蛙素类化合物的三维构效模型.通过验证,说明该系列化合物分子立体场、静电场、氢键场和疏水场的分布与生物活性之间有良好的相关性.用模型预测同系列测试集分子,结果与实验值偏差较小.预测结果表明,该力场模型有一定的预测能力.并得出了新的药效团定义模型,可用来指导设计新的地棘蛙素类化合物烟碱型乙酰胆碱配体.     

CS结构修饰及其与AA相互作用的空间位阻效应

为从分子水平探讨硫酸化多糖与小分子相互作用机理,本文采用氯磺酸-吡啶法(Wolfrom法)对硫酸软骨素(CS)进行结构修饰,制得了不同硫取代度的CS样品.应用光谱法研究了天青A(AA)与CS相互作用的吸收光谱,考察了硫取代度对CS抗凝血活性及AA与CS相互作用的影响,应用建立的酸性多糖与生物探针相互作用数学模型,测得AA与不同硫取代度的CS最大结合数分别为151,215,211和204,认为AA与CS相互作用具有空间位阻效应.     

Unfolding of C2A Domain of Synaptotagmin I in the Presence of Guanidine Hydrochloride

The C2 domain originally referred to the second of four constant structural motifs in protein kinase C (PKC). Now this domain represents a large structural family sharing a homologous dimensional structure in many proteins that play important roles in many organisms. The C2A domain is one of the two C2 domains of synaptotagmin I involved in the Ca^2 regulation of exocytosis. This domain is mostly composed of β-sheet except for a small fraction of α-helix, and therefore provides an ideal model for a protein folding study. In this report, the unfolding equilibrium of the C2A domain in guanidine hydrochloride (GdnHCI) containing solutions has been studied using ultraviolet (UV) difference spectrum, fluorescence spectrum, size exclusion chromatography (SEC), and circular dichroism (CD) spectrum. The results suggest that unfolding of the C2A domain occurs as a two-state process during GdnHCI titration. By examining the changes of both tertiary structure and secondary structure, no intermediates could be detected during this unfolding study. However, it has been found that the native state of the C2A domain has a large hydrophobic surface. This result suggests that as a fragment of a protein, the C2A domain itself may exist in a state with large hydrophobic surface. This hydrophobic surface may be the molecular basis for interaction between domains in the whole protein.Furthermore, the hydrophobic behavior may play a role during the oligomerization of svnaptotagmin.     

用量子化学方法预测PCDFs的Ah受体结合能力(1)--神经网络模型

利用AM1半经验量子化学方法计算135种多氯联苯并呋喃(PCDFs)的12种结构一性质参数,以30种已有文献值的PCDFs为训练样本,采用误差反向传播人工神经网络(BP—ANN)方法建立PCDFs芳烃(Ah)受体结合能力的定量结构活性关系(QSAR)方程,对训练样本集以外的3个测试样本的检验结果表明,模型具有相当高的精度(训练样本最大相对误差小于5％,检验样本最大相对误差小于7％),且误差频数符合正态分布,表明该模型可用于未知样本的定量预测,据此给出目前尚没有文献值的其余102种PCDFs的Ah受体结合能力的预测值。     

脂肪醇气相色谱保留指数与结构的相关性

根据分子拓扑理论,采用了2个拓扑指数.将这2个拓扑指数用于脂肪醇定量结构-保留关系的研究,发现它们与25种脂肪醇在6种固定相上的气相色谱保留指数存在优良的相关性,表明2个拓扑指数能较好地反映化合物的结构特征.由此得到了新的定量结构-保留关系模型,并建立了6个线性方程,相关系数均高于0.98,在固定相SE-30上的平均相对偏差仅为1.30%.这些方程可用于脂肪醇气相色谱保留指数的预测.     

烷基硝基苯酚类化合物在气相色谱中的QSRR研究

利用分子力学和量子化学方法计算出烷基硝基苯酚类化合物的分子结构描述参数,用多元线性回归法建立化合物在不同极性色谱柱上的QSRR模型。烷基硝基苯酚类化合物在不同极性色谱柱上的气相色谱保留指数与其分子结构描述参数之间具有较好的线性关系。建立的在不同极性色谱柱上的烷基硝基苯酚类化合物的色谱保留QSRR模型预测此类化合物的色谱保留值时具有较好的稳定性和准确性。     

中性油同矿粒间的相互作用

研究了中性油乳浊液同矿粒间的相互作用。从热力学角度讨论了油滴同矿粒作用的条件。通过对粒子间的范氏作用力、静电力和疏水作用力的定量计算和化学作用力的分析,解释了油滴同矿粒间作用的选择性。最后,在物理模型的基础上,说明了“空间效应”的产生。     

烷基硫醇类化合物在气相色谱中的QSRR研究

利用分子力学和量子化学方法计算出烷基硫醇类化合物的分子结构描述参数,用多元线性回归法建立化合物在不同极性色谱柱上的QSRR模型。烷基硫醇类化合物在不同极性色谱柱上的气相色谱保留指数与其拓扑指数之间具有较好的线性关系。建立的不同极性色谱柱上的烷基硫醇类化合物的色谱保留QSRR模型预测此类化合物的色谱保留值,具有较好的稳定性和准确性。