From sunspots to the Southern Oscillation: confirming models of large-scale phenomena in meteorology

The epistemic problem of assessing the support that some evidence confers on a hypothesis is considered using an extended example from the history of meteorology. In this case, and presumably in others, the problem is to develop techniques of data analysis that will link the sort of evidence that can be collected to hypotheses of interest. This problem is solved by applying mathematical tools to structure the data and connect them to the competing hypotheses. I conclude that mathematical innovations provide crucial epistemic links between evidence and theories precisely because the evidence and theories are mathematically described.     

The geometry of knowledge: Lewis, Becker, Carnap and the formalization of philosophy in the 1920s

On an ordinary view of the relation of philosophy of science to science, science serves only as a topic for philosophical reflection, reflection that proceeds by its own methods and according to its own standards. This ordinary view suggests a way of writing a global history of philosophy of science that finds substantially the same philosophical projects being pursued across widely divergent scientific eras. While not denying that this view is of some use regarding certain themes of and particular time periods, this essay argues that much of the epistemology and philosophy of science in the early twentieth century in a variety of projects (neo-Kantianism, logical empiricism, pragmatism, phenomenology) looked to the then current context of the exact sciences, especially geometry and physics, not merely for its topics but also for its conceptual resources and technical tools. This suggests a more variable project of philosophy of science, a deeper connection between early twentieth-century philosophy of science and its contemporary science, and a more interesting and richer history of philosophy of science than is ordinarily offered.     

From MDR to MXR: new understanding of multidrug resistance systems, their properties and clinical significance

The ATP binding cassette (ABC) superfamily of membrane transporters is one of the largest protein classes known, and counts numerous proteins involved in the trafficking of biological molecules across cell membranes. The first known human ABC transporter was P-glycoprotein (P-gp), which confers multidrug resistance (MDR) to anticancer drugs. In recent years, we have obtained an increased understanding of the mechanism of action of P-gp as its ATPase activity, substrate specificity and pharmacokinetic interactions have been investigated. This review focuses on the functional characterization of P-gp, as well as other ABC transporters involved in MDR: the family of multidrug-resistance-associated proteins (MRP1-7), and the recently discovered ABC half-transporter MXR (also known as BCRP, ABCP and ABCG2). We describe recent progress in the analysis of protein structure-function relationships, and consider the conceptual problem of defining and identifying substrates and inhibitors of MDR. An in-depth discussion follows of how coupling of nucleotide hydrolysis to substrate transport takes place, and we propose a scheme for the mechanism of P-gp function. Finally, the clinical correlations, both for reversal of MDR in cancer and for drug delivery, are discussed.