珊瑚礁相关病毒的研究进展

珊瑚礁被称为海洋中的“热带雨林”,是海洋生态系统中的核心组成部分之一。珊瑚礁病毒包含珊瑚本身感染的病毒和珊瑚共生生物（如藻类、细菌等）感染的病毒,对于珊瑚礁健康与疾病、生长与死亡起着独特而重要的作用,在维持珊瑚礁生态系统的物质循环和能量流动等生态学功能方面起着潜在作用。由于技术的局限以及关注度较低等原因,有关珊瑚礁病毒的研究较少。近年来,随着高通量测序技术的发展,宏转录组和宏基因组逐渐成为研究珊瑚礁病毒多样性及其生态学功能的重要方法之一。本文对国内外相关研究进行总结和归纳,拟为珊瑚礁病毒后续研究提供新的方向和思路,同时指导我国珊瑚礁的保护以及修复。     

Thresholds and the resilience of Caribbean coral reefs

The deteriorating health of the world's coral reefs threatens global biodiversity, ecosystem function, and the livelihoods of millions of people living in tropical coastal regions. Reefs in the Caribbean are among the most heavily affected, having experienced mass disease-induced mortality of the herbivorous urchin Diadema antillarum in 1983 and two framework-building species of coral. Declining reef health is characterized by increases in macroalgae. A critical question is whether the observed macroalgal bloom on Caribbean reefs is easily reversible. To answer this question, we must resolve whether algal-dominated reefs are an alternative stable state of the ecosystem or simply the readily reversible result of a phase change along a gradient of some environmental or ecological parameter. Here, using a fully parameterized simulation model in combination with a simple analytical model, we show that Caribbean reefs became susceptible to alternative stable states once the urchin mortality event of 1983 confined the majority of grazing to parrotfishes. We reveal dramatic hysteresis in a natural system and define critical thresholds of grazing and coral cover beyond which resilience is lost. Most grazing thresholds lie near the upper level observed for parrotfishes in nature, suggesting that reefs are highly sensitive to parrotfish exploitation. Ecosystem thresholds can be combined with stochastic models of disturbance to identify targets for the restoration of ecosystem processes. We illustrate this principle by estimating the relationship between current reef state (coral cover and grazing) and the probability that the reef will withstand moderate hurricane intensity for two decades without becoming entrained in a shift towards a stable macroalgal-dominated state. Such targets may help reef managers face the challenge of addressing global disturbance at local scales.     

贵州、广西石炭纪晚期生物礁群落生态系统对比

为了深入认识石炭纪晚期生物礁的生物和环境因素对礁体发育的影响，通过礁群落生态和栖息环境两个方面，对贵州、广西石炭纪晚期造礁生物群落生态特征、生物因素对礁群落发育的影响、礁体发育背景和礁体建造规模的影响等方面进行对比研究.贵州猴场地区造礁生物群落中关键种优势地位明显，造礁生物生长迅速、统殖能力强，礁体规模大使得生物礁发育较成熟；广西浪平地区点礁中没有明显的关键种和优势种，造礁生物生态特点不突出、造礁能力弱，滩相环境影响显著和礁体规模偏小是其礁体发育差的直接原因.     

Coral communities are regionally enriched along an oceanic biodiversity gradient

Ecological communities are influenced by processes operating at multiple scales. Thus, a better understanding of how broad- as well as local-scale processes affect species diversity and richness is increasingly becoming a central focus in modern community ecology. Here, in a study of unprecedented geographical scope, we show significant regional and local variation in the species richness of coral assemblages across an oceanic biodiversity gradient. The gradient that we sampled extends 10,000 km eastwards from the world's richest coral biodiversity hotspot in the central Indo-Pacific. Local richness and the size of regional species pools decline significantly across 15 islands spanning the gradient. In addition, richness declines across three adjacent habitats (reef slopes, crests and flats). In each habitat, a highly consistent linear relationship between local and regional species richness indicates strong regional enrichment. Thus, even on the most diverse coral reefs in the world, local coral assemblages are profoundly affected by regional-scale processes. Understanding these historical and biogeographical influences is essential for the effective management and preservation of these endangered communities.     

Local dispersal promotes biodiversity in a real-life game of rock-paper-scissors

One of the central aims of ecology is to identify mechanisms that maintain biodiversity. Numerous theoretical models have shown that competing species can coexist if ecological processes such as dispersal, movement, and interaction occur over small spatial scales. In particular, this may be the case for non-transitive communities, that is, those without strict competitive hierarchies. The classic non-transitive system involves a community of three competing species satisfying a relationship similar to the children's game rock-paper-scissors, where rock crushes scissors, scissors cuts paper, and paper covers rock. Such relationships have been demonstrated in several natural systems. Some models predict that local interaction and dispersal are sufficient to ensure coexistence of all three species in such a community, whereas diversity is lost when ecological processes occur over larger scales. Here, we test these predictions empirically using a non-transitive model community containing three populations of Escherichia coli. We find that diversity is rapidly lost in our experimental community when dispersal and interaction occur over relatively large spatial scales, whereas all populations coexist when ecological processes are localized.     

Confronting the coral reef crisis

The worldwide decline of coral reefs calls for an urgent reassessment of current management practices. Confronting large-scale crises requires a major scaling-up of management efforts based on an improved understanding of the ecological processes that underlie reef resilience. Managing for improved resilience, incorporating the role of human activity in shaping ecosystems, provides a basis for coping with uncertainty, future changes and ecological surprises. Here we review the ecological roles of critical functional groups (for both corals and reef fishes) that are fundamental to understanding resilience and avoiding phase shifts from coral dominance to less desirable, degraded ecosystems. We identify striking biogeographic differences in the species richness and composition of functional groups, which highlight the vulnerability of Caribbean reef ecosystems. These findings have profound implications for restoration of degraded reefs, management of fisheries, and the focus on marine protected areas and biodiversity hotspots as priorities for conservation.     

热带岛礁型海洋牧场中珊瑚礁生境与资源的修复

我国南海的离岸岛礁以珊瑚礁生境为主。珊瑚礁在提升海洋生态资源和维护我国海洋国土权益上发挥了至关重要的作用。近年来,在全球气候变化以及人类活动的影响下,南海珊瑚礁生境和资源严重退化,威胁着渔业资源、海洋环境以及国土安全。现代化的海洋牧场被认为是实现南海资源可持续发展战略的新型海洋生物资源开发模式。珊瑚礁生境与资源的修复则是热带岛礁型海洋牧场建设的基础和关键。基于此,本文整理了珊瑚礁生境与资源修复的技术方法,详细介绍了珊瑚礁生境构建框架生物造礁石珊瑚的有性繁殖、断枝培育、底播移植等技术方法以及珊瑚礁其他特色生物资源人工放流技术,并提出了在珊瑚礁生境与资源修复中所面临的问题及相应对策。     

涠洲岛珊瑚礁特点、演变及保护与修复对策的思考

涠洲岛珊瑚礁最早形成于约7 000年前的末次海侵,是中国大陆沿海成礁珊瑚分布最北缘的典型边缘珊瑚礁（Marginal Coral Reefs）,与区域内其他珊瑚礁缺少生态关联,其特征不同于热带珊瑚礁,即块状珊瑚占优势。20多年来,涠洲岛珊瑚礁持续退化,枝状珊瑚大量死亡,石珊瑚盖度急剧降低,反映珊瑚礁良好状况的指标生物如鹦嘴鱼、蝴蝶鱼等的数量大幅减少。近10年来,珊瑚虽未出现异常死亡现象,但珊瑚自然修复不明显,表明珊瑚补充不足。功能性植食性鱼类的缺乏,显示珊瑚礁恢复力不足。涠洲岛珊瑚礁国家级海洋公园的建立,体现了保护涠洲岛珊瑚礁的政治意愿。只有恢复鹦嘴鱼等功能性植食性鱼类的数量,才能恢复和增强珊瑚礁固有恢复力,进而促进涠洲岛珊瑚礁的自然恢复。人为修复可采取移植珊瑚断枝的方式,并以实现生态、经济和社会增益为目标,构建能应对人为干预且能持续演化的珊瑚礁。     

Diversity and productivity peak at intermediate dispersal rate in evolving metacommunities

Positive relationships between species diversity and productivity have been reported for a number of ecosystems. Theoretical and experimental studies have attempted to determine the mechanisms that generate this pattern over short timescales, but little attention has been given to the problem of understanding how diversity and productivity are linked over evolutionary timescales. Here, we investigate the role of dispersal in determining both diversity and productivity over evolutionary timescales, using experimental metacommunities of the bacterium Pseudomonas fluorescens assembled by divergent natural selection. We show that both regional diversity and productivity peak at an intermediate dispersal rate. Moreover, we demonstrate that these two patterns are linked: selection at intermediate rates of dispersal leads to high niche differentiation between genotypes, allowing greater coverage of the heterogeneous environment and a higher regional productivity. We argue that processes that operate over both ecological and evolutionary timescales should be jointly considered when attempting to understand the emergence of ecosystem-level properties such as diversity-function relationships.     

安徽东至早奥陶世红花园组生物礁:奥陶纪生物大辐射前的微生物礁

通过对安徽东至建新剖面红花园组的生物礁、微生物岩进行研究,发现蓝绿菌类Girvanella在生物礁中大量分布,是生物礁的主要造礁成分.其他造礁生物包括瓶筐虫、石海绵、腹足类、腕足类、棘皮类等.Girvanella以散乱分布、包壳、组成内碎屑以及与海绵伴生等4种方式在本区生物礁中存在,并且在生物礁成礁过程中以生物本体矿化作用及粘结、捕获颗粒的作用形成生物礁格架;瓶筐虫及石海绵为生物礁中的居住者,因此,生物礁性质为瓶筐虫/石海绵-微生物礁,微生物起到了主要的造礁作用.此外红花园组典型含生物礁沉积序列是由底部的生屑灰岩基底、中部的海绵层(少量微生物岩)及顶部的微生物岩组成的.通过与其他地区同时代生物礁的对比发现,东至建新剖面红花园组中瓶筐虫/石海绵-微生物礁的发育及微生物的繁盛是全球性的,是由于底栖生物扰动对潮下带微生物发育影响尚未彰显造成的.     

贵州布寨泥盆纪生物礁的古生物学和古生态学特征

贵州布寨泥盆纪生物礁发育在独山组的鸡泡段和鸡窝寨段,大部分是骨架礁,主要由层孔虫和床板珊瑚构成。部分是障积礁,主要由枝状床板珊瑚和藻类构成。在礁组合中可识别出4个生物群落和一个生物组合,各生物群落和生物组合发育于各自互不相同的环境。根据生物群落和生物组合的生态分析及与邻区礁组合的生物群落对比,认为布寨礁发育在环境条件较为稳定的浅海,海水的温度、含盐度、清洁度、深度和水动力条件都比较适合造礁生物生长。图2,参9。     

建南构造晚二叠世长兴期点礁和滩的高精度层序地层与储层评价

湖北利川的建南构造上二叠统长兴组长二段台地内的点礁和滩相沉积,为晚二叠世鄂西和川、渝东开阔台地内礁、滩的典型代表,其生长、发育受控于相对海平面变化.以薄片鉴定、钙镁分析和电测资料分析入手,将海平面变化与礁、滩体的沉积过程进行综合分析,可从长二段划分出2.5个四级沉积层序.在长二段礁、滩形成机理的系统研究基础上,指出礁、滩是在开阔台地上相对高的丘状隆起基底上发育起来的;白云岩化研究的结果,表明礁、滩的白云岩化和储层孔隙的发育与高位期的间歇性暴露与混合水作用有关.由于海平面变化的幅度较小及持续的时间较短,使得台内礁、滩的间歇性暴露时间较短,白云岩化强度不一,从而造成了礁、滩储层严重的非均质性.     

Ecological consequences of major hydrodynamic disturbances on coral reefs

A recent tsunami and an apparent increase in the frequency of severe tropical storms underscore the need to understand and predict the ecological consequences of major hydrodynamic disturbances. Reef corals provide the habitat structure that sustains the high biodiversity of tropical reefs, and thus provide the foundation for the ecosystem goods and services that are critical to many tropical societies. Here we integrate predictions from oceanographic models with engineering theory, to predict the dislodgement of benthic reef corals during hydrodynamic disturbances. This generalizes earlier work, by incorporating colonies of any shape and by explicitly examining the effects of hydrodynamic gradients on coral assemblage structure. A field test shows that this model accurately predicts changes in the mechanical vulnerability of coral colonies, and thus their size and shape, with distance from the reef crest. This work provides a general framework for understanding and predicting the effects of hydrodynamic disturbances on coral reef communities; such disturbances have a major role in determining species zonation and coexistence on coral reefs, and are critical determinants of how coral assemblages will respond to changes in the frequency and intensity of tropical storms associated with a changing climate.     

安徽东至早奥陶世红花园组生物礁:奥陶纪生物大辐射前的微生物礁

通过对安徽东至建新剖面红花园组的生物礁、微生物岩进行研究,发现蓝绿菌类Girvanella在生物礁中大量分布,是生物礁的主要造礁成分。其他造礁生物包括瓶筐虫、石海绵、腹足类、腕足类、棘皮类等。Girvanella以散乱分布、包壳、组成内碎屑以及与海绵伴生等4种方式在本区生物礁中存在,并且在生物礁成礁过程中以生物本体矿化作用及粘结、捕获颗粒的作用形成生物礁格架;瓶筐虫及石海绵为生物礁中的居住者,因此,生物礁性质为瓶筐虫/石海绵-微生物礁,微生物起到了主要的造礁作用。此外红花园组典型含生物礁沉积序列是由底部的生屑灰岩基底、中部的海绵层(少量微生物岩)及顶部的微生物岩组成的。通过与其他地区同时代生物礁的对比发现,东至建新剖面红花园组中瓶筐虫/石海绵-微生物礁的发育及微生物的繁盛是全球性的,是由于底栖生物扰动对潮下带微生物发育影响尚未彰显造成的。     

Mangroves enhance the biomass of coral reef fish communities in the Caribbean

Mangrove forests are one of the world's most threatened tropical ecosystems with global loss exceeding 35% (ref. 1). Juvenile coral reef fish often inhabit mangroves, but the importance of these nurseries to reef fish population dynamics has not been quantified. Indeed, mangroves might be expected to have negligible influence on reef fish communities: juvenile fish can inhabit alternative habitats and fish populations may be regulated by other limiting factors such as larval supply or fishing. Here we show that mangroves are unexpectedly important, serving as an intermediate nursery habitat that may increase the survivorship of young fish. Mangroves in the Caribbean strongly influence the community structure of fish on neighbouring coral reefs. In addition, the biomass of several commercially important species is more than doubled when adult habitat is connected to mangroves. The largest herbivorous fish in the Atlantic, Scarus guacamaia, has a functional dependency on mangroves and has suffered local extinction after mangrove removal. Current rates of mangrove deforestation are likely to have severe deleterious consequences for the ecosystem function, fisheries productivity and resilience of reefs. Conservation efforts should protect connected corridors of mangroves, seagrass beds and coral reefs.     

The diversity-stability debate

There exists little doubt that the Earth's biodiversity is declining. The Nature Conservancy, for example, has documented that one-third of the plant and animal species in the United States are now at risk of extinction. The problem is a monumental one, and forces us to consider in depth how we expect ecosystems, which ultimately are our life-support systems, to respond to reductions in diversity. This issue--commonly referred to as the diversity-stability debate--is the subject of this review, which synthesizes historical ideas with recent advances. Both theory and empirical evidence agree that we should expect declines in diversity to accelerate the simplification of ecological communities.     

川东地腹区长兴礁岩的成岩作用和孔隙演化特征

川东地腹区长兴组生物礁的主要成岩作用为泥晶化、填积、胶结、白云化和溶蚀作用。其中白云化和溶蚀作用对次生孔隙发育起控制作用。上覆致密碳酸盐岩、泥质岩类等是很好的盖层,因此,礁气藏是典型的岩性-成岩圈闭型气藏。对北部、东部的“干死型”和南部、西部的“淹死型”生物礁成岩序列也有叙述。     

碳酸盐岩生物礁地震响应特征的数值模拟

针对碳酸盐岩生物礁储层具有较强非均质性的特点,利用叠前黏弹性波动方程正演数值模拟方法,模拟了碳酸盐岩生物礁、滩的地震响应特征,为地震资料识别生物礁储层提供依据.模拟结果显示,在生物礁两侧出现上超反射,礁顶明显见披覆现象,在礁体内部产生S形前积反射、弱反射或杂乱反射,在礁前缘斜坡相外形呈楔状且礁底为下超反射终止.此外,礁体顶底界反射产生极性反转,底部反射同相轴可能出现上凸或下凹现象,而深度域成像剖面可以消除上凸或下凹现象.     

Estimate of carbonate production by scleractinian corals at Luhuitou fringing reef, Sanya, China

Carbonate production by scleractinian corals not only maintains coral reef growth, but also represents an important source of atmospheric carbon dioxide. In this paper the carbonate production by scler-actinian corals at Luhuitou fringing reef, Sanya, Hainan Island, China, is investigated with an ecological census-based method. Averaged carbonate production is 1.16 ± 0.55 kg·m-2·a-1 and 3.52 ± 1.32 kg·m-2·a-1 on the reef flat and reef slope, respectively, depending on the composition and distribution of cor...     

黔南石炭纪珊瑚礁与南海现代珊瑚礁的对比研究

根据沉积环境和珊瑚礁的特征,分别对两种礁体进行了沉积相带的划分和建造过程的对比研究.分析表明:扁平村珊瑚礁中充填了大量的蜓、海百合茎和腕足碎屑等附礁生物组分,而现在珊瑚礁中的充填物大都以珊瑚碎屑为主;两种礁体虽形成于不同的时代,但具有类似的沉积相带分布和礁体形成过程,这与礁群落的盛衰状况密不可分.与晚石炭世的四射珊瑚相比,现代六射珊瑚对环境的适应能力更强,现代珊瑚礁的形成过程也更加曲折.