肝细胞癌特异抗原的筛选

应用重组克隆表达抗原的血清学鉴定技术,从广西肝细胞癌中初步筛选出９个基因克隆,与肝癌患者及其他人血清的反应证明对肝癌有特异性。ＤＮＡ测序结果与基因库核对,发现其中７个有同源结构;２个为无同源结构的新分子。     

通过差减文库筛选山羊羔肠道淋巴集结特异表达基因

羊羔肠道淋巴集合淋巴结（Peyer's patch,以下简称PP）,是B淋巴细胞的主要来源地和发育、成熟场所,兼具中枢淋巴器官和周围淋巴器官的功能.采用抑制性差减杂交（suppression subtractive hybridization,SSH）方法,构建山羊羔肠道淋巴集结与其非PP肠壁组织的差减 cDNA 文库,以期找到在山羊羔肠道淋巴集结中特异表达的与免疫相关的基因. 分别从山羊羔PP与非PP肠壁组织提取总RNA,反转录成cDNA,以PP作为待检组织(tester),非PP肠壁作为驱动组织(driver),经过两轮杂交和抑制性PCR扩增,产物与T载体连接,经蓝白斑筛选,提取质粒,经EcoRI酶切鉴定插入片段并测序,由此构建了两种组织间差异表达基因的差减cDNA文库. 对其中160个克隆测序,得到几个可能与免疫相关的基因,为进一步从中挑选和表达活性蛋白基因用于生产免疫增强剂奠定了基础.     

人B淋巴细胞刺激因子的真核表达以及表达条件的筛选

采用基因克隆、重组等方法，将人B淋巴细胞刺激因子（hsBLyS）基因从人胎盘cDNA文库中克隆出来，测序鉴定后得组构建成真核表达载体pcDNA3．1( )hsBLyS，然后用磷酸钙法和脂质体法分别转染真核宿主细胞COS－7，并在其中表达48h、36h、72h、96h；表达细胞经超声处理后离心，上清进行SDS－PAGE鉴定，结果表明：对于hsBLyS来说，磷酸钙法比脂质体法转染效果好，而且对于磷酸钙法，表达量是72h达到最高。     

用差减cDNA文库筛选由热激导致的小鼠睾丸中差异表达的基因

采用抑制性差减杂交（Suppression Subtractive Hybridization, SSH）方法,构建正常和热激小鼠睾丸组织的差减 cDNA 文库,以期 筛选出小鼠生精过程中对热敏感的基因。分别从正常和热激小鼠睾丸组织提取总RNA,反转录成cDNA,以正常小鼠睾丸组织cDNA作为待检组织(tester),以热激小鼠睾丸组织cDNA作为驱动组织(driver), 经过2轮杂交和抑制性PCR扩增,产物与T载体连接,经蓝白斑筛选,提取质粒,经EcoRI酶切鉴定插入片段并测序,由此构建了2种组织间差异表达基因的差减cDNA文库。用半定量RT-PCR方法,进一步验证 了该文库中差减出的基因基本上为差异表达的基因。对随机挑选其中的932个克隆测序,对有效测序的565个基因序列与GenBank数据库中发布的序列进行同源性比较,大部分片段都可以检索到同源序列。 结果显示,cPGES/p23等13个基因热激后表达量上调;septin2等120个基因热激后表达量下调。其中cPGES/p23为本研究中首次发现的小鼠生精过程中对热敏感的基因。     

宫颈癌组织差异表达基因的检测及分析

选取三例经分型明确为HPV16感染的宫颈癌病例,取癌组织(T)、癌旁组织(N)及远瘤正常宫颈组织(F)标本,用Roche NimbleGen芯片系统筛选出差异表达的基因并进行分析.三例标本中,癌组织与远瘤正常宫颈组织相比,差异表达基因共有673个,其中261个上调,412个下调;差异表达基因主要有原癌基因、抑癌基因、细胞信号转导、代谢、免疫应答、细胞受体、蛋白翻译合成有关基因等.     

麻疯树胚乳cDNA文库的构建与分析

以等质量比的不同发育阶段的麻疯树（Jatropha curcas L.）胚乳为材料构建麻疯树胚乳cDNA文库.初级文库滴度为1.5×106 Pfu/mL,重组率为99.7％,插入片段大小为0.4～4 kb,平均约1 kb.全长基因的比例达到20％.推测的蛋白质序列种类主要包括贮存蛋白相关、转录表达调控相关、脂肪酸合成相关及信号传导相关等同源基因序列.编码功能基因的类型与分布情况同Joseph A White等构建的蓖麻胚乳cDNA文库基本一致,个别类型如贮存蛋白合成相关基因的比例相比较低,信号传导     

应用抑制性消减杂交技术构建人肝癌组织特异表达cDNA文库

为克隆和筛选肝癌特异表达基因.应用抑制消减杂交技术对肝癌及癌旁组织进行消减杂交,产物PCR扩增后,进行克隆.共得到1820个克隆,1776个克隆有100~800bp的插入片断,阳性率达98%,说明人肝癌组织特异表达cDNA消减文库构建成功,同时我们对cDNA克隆进行测序,证明这些克隆的功能是和肝癌的发生高度相关的.抑制消减杂交是克隆特异表达基因的有效方法.     

水稻全长均一化cDNA文库构建及SDG725结合蛋白筛选

为了筛选水稻组蛋白甲基转移酶SDG725的结合蛋白,构建了水稻全长均一化cDNA文库,以SDG725C末端为诱饵蛋白对cDNA文库进行筛选.最后筛选到70个可能与SDG725相互作用的蛋白,同时对筛选出的候选蛋白进行GO功能分析和亚细胞定位预测,并对部分蛋白与蛋白相互作用进行了验证.研究结果发现筛选到的结合蛋白有17%位于细胞核中,更多位于核外,为进一步研究SDG725的生物学功能提供理论基础.     

Sequence analysis of mRNA polyadenylation signals of rice genes

Most eukaryotic mRNAs receive a poly (A) tail at their 3′-ends through a process involving the cleavage of pre-mRNA and the concomitant polymerization of adenosine residues to the cleaved RNA end[1,2]. As un- translated regions (UTRs) may contain importa…     

应用表达谱基因芯片筛选植物激活蛋白处理水稻相关差异基因

应用基因表达谱检测植物激活蛋白处理水稻相关差异基因的表达,建立相关基因表达谱。用Cy5和Cy3分别标记激活蛋白处理和对照cDNA,将两种荧光探针混合,与载有10368位点的水稻表达谱cDNA基因芯片进行杂交,并用芯片扫描系统进行扫描,通过Cy5与Cy3信号强度比值的计算研究基因的表达差异。共获得97个差异表达基因,其中上调基因4个,下调基因93个。应用基因表达谱芯片成功筛选了植物激活蛋白处理水稻差异表达的基因,为深入揭示该激活蛋白的作用机制研究提供依据。     

cDNA cloning and expression of earthworm fibrinolytic enzyme component A

Earthworm fibrinolytic enzyme component A(EFEa),a protein with dual fibrinolytic activity ,is one of the major therapeutically important earthworm fibrinoltic enzyme components .The cDNA fragment encoded the mature protein was cloned from earthworm (Eisenia fetida )by the RT-PCR technique,The deduced amino acid sequence of the EFE component A show high homology with some members of serine proteases trypsin family,and the amino acid residues constituting the active sites are conserved in the EFEa as compared with the other proteins of the trypsin family ,The cDNA fragment was subcloned into the expression vector pQE31 and pMAL-c2X of E.coli.The resulting expression plasmids,pQE-efea and pMAL-efea ,were used to transform the E.coli strain M15.Recombinant protein bands corresponding with calcuated molecular witht were induced .The induced His6-EFEa fusion protein with pQE-efea was accumulated into inclusion body ,while the induced MBP-EFEa fusion protein with pMAL-efea was soluble and showed fibrinoloytic activities.     

Cloning and sequence analysis of a gene encoding polygalacturonase-inhibiting protein from cotton

Polygalacturonase-inhibiting proteins (PGIP) play important roles in plant defense of pathogen, especially fungi. A pair of degenerated primers is designed based on the conserved sequence of 20 other known pgip genes and used to amplify Gossypium barbadense cultivation 7124 cDNA library by touch-down PCR. A 561 bp internal fragment of the pgip gene is obtained and used to design the primers for rapid amplification of cDNA ends. A composite pgip gene sequence is constructed from the products of 5′ and 3′ RACE, which are 666 bp and 906 bp respectively. Analysis of nucleic acid sequence shows 69.2% and 68.7% similarity to Citrus and Poncirus pgip genes, respectively. Its open reading frame of the gene encodes a polypeptide of 330 amino acids, in which 10 leucine-rich repeats arrange tandemly. A new set of primers is designed to the 5′ and 3′ ends of the gene, which allows amplification of the full-length gene from the cotton cDNA library. Genomic DNA analysis reveals that this gene has no intron.     

人Kai-1基因真核表达载体的构建及其体外表达

克隆人Kai-1基因,构建其真核表达载体,并在体外细胞系中进行表达验证。提取人正常肝细胞系HL7702的总RNA,通过RT-PCR其反转录为c DNA;以该c DNA为模板,通过PCR扩增出Kai-1基因的编码区,将该目的片段纯化后亚克隆入真核表达载体pc DNA3.1myc-his(-)中,利用菌落PCR及DNA测序分别对Kai-1基因编码区的大小及序列进行鉴定。将所构建的重组质粒通过脂质体瞬时转染Hela细胞,48 h后裂解细胞,利用Western blot检测有无目的蛋白的表达。测序证实所克隆的Kai-1编码区c DNA正确地插入pc DNA3.1myc-his(-)中,经Western blot检测证实其在Hela细胞中得到表达。成功克隆了人Kai-1 c DNA,构建了其真核表达载体,并在Hela细胞中得到有效表达,为进一步研究Kai-1的功能奠定了基础。     

人18周胎儿脑cDNA文库的构建及鉴定

许多脑基因的特异性表达对人脑的发育，分化有着重要的作用，为了研究这些基因的结构和功能，构建了一个人１８周胎儿脑ＣＤＮＡ文库，抽提总ｍＲＮＡ后，经过一系列的酶促反应合成ｃＤＮＡ，分有分离柱除去小片段后克隆到λｇｔ１０载体中，转染宿主菌Ｃ６００ｊｆｌ后文库包装效率为４．６×１０＾６ｐｆｕ／μｇ，ｃＤＮＡ平均郫在于１．２ｋｂｐ已知序列设计引物，从ｃＤＮＡ文库中扩增出神经生长因子（ＮＧＦ）的生长编码基因     

Cloning, sequencing and expression analysis of cDNA encoding a constitutive heat shock protein 70 （HSC70） in Fenneropenaeus chinensis

The cDNA encoding hsc70 of Chinese shrimp Fenneropenaeus chinensis was cloned from hepatopancreas by RT-PCR based on its EST sequence. The full length cDNA of 2090 bp contained an open reading frame of 1956 nucleotides and partial 5‘- and 3‘-untranslated region(5‘- and 3‘-UTR). PCR amplification and sequencing analysis showed the existence of introns in the region of 1--547 bp, but they did not exist in the region of 548--2090 bp of hsc70 cDNA. When the deduced 652 amino acid sequence of HSC70 was compared with the members of HSP70 family from other organisms, the results showed 85.9% similarity with HSC71 from Oncorhynchus mykiss and HSC70 from Homo sapiens. It also exhibited 85.8% similarity with HSP70 from Mus musculu and 85.4% with HSC70 from Manduca sexta. Expression analysis showed that hsc70 mRNA was espressed constitutively in hepatopancreas, muscle, eyestalks, haemocytes, heart, ovary, intestine and gills in Fenneropenaeus chinensis. No difference could be detected on hsc70 mRNA level in muscle between heat-shocked and control animals.