Expanded flux variability analysis on metabolic network of Escherichia coli

Flux balance analysis, based on the mass conservation law in a cellular organism, has been extensively employed to study the interplay between structures and functions of cellular metabolic networks. Consequently, the phenotypes of the metabolism can be well elucidated. In this paper, we introduce the Expanded Flux Variability Analysis (EFVA) to characterize the intrinsic nature of metabolic reactions, such as flexibility, modularity and essentiality, by exploring the trend of the range, the maximum and the...     

Arctic dipole anomaly and summer rainfall in Northeast China

A dipole structure anomaly in summer Arctic atmospheric variability is identified in this study, which is characterized by the second mode of empirical orthogonal function （EOF） analysis of summer monthly mean sea level pressure （SLP） north of 70°N, accounting for 12.94% of the variance. The dipole anomaly shows a quasi-barotropic structure with opposite anomalous centers over the Canadian Arctic and the Beaufort Sea and between the Kara Sea and the Laptev Sea. The dipole anomaly reflects alternating variations in location of the polar vortex between the western and eastern Arctic regions. The positive phase of the dipole anomaly corresponds to the center of the polar vortex over the western Arctic, leading to an increase in summer mean rainfall in Northeast China. The dipole anomaly has a predominant 6-year periodicity, and shows interdecadal variations in recent decades.     

Inductive transfer learning for unlabeled target-domain via hybrid regularization

Recent years have witnessed an increasing interest in transfer learning. This paper deals with the classification problem that the target-domain with a different distribution from the source-domain is totally unlabeled, and aims to build an inductive model for unseen data. Firstly, we analyze the problem of class ratio drift in the previous work of transductive transfer learning, and propose to use a normalization method to move towards the desired class ratio. Furthermore, we develop a hybrid regularization framework for inductive transfer learning. It considers three factors, including the distribution geometry of the target-domain by manifold regularization, the entropy value of prediction probability by entropy regularization, and the class prior by expectation regularization. This framework is used to adapt the inductive model learnt from the source-domain to the target-domain. Finally, the experiments on the real-world text data show the effectiveness of our inductive method of transfer learning. Meanwhile, it can handle unseen test points.     

Detection of infrared photons with a superconductor

A superconductor single photon detector based on NbN nanowire was fabricated using electron beam lithography （EBL） and reactive ion etching （RIE） for infrared photon detection. When biased well below its critical current at 4.2 K, NbN nanowire is very sensitive to the incident photons. Typical telecommunication photons with a wavelength of 1550 nm were detected by this detector. Data analysis indicates the repeating rate of the device with 200 nm NbN nanowire may be up to 100 MHz, and the quantum efficiency is about 0,01% when biased at 0.95/c.     

New research advancement in electrical engineering field of China-Reviews on special issue of Science in China Series E: Technological Sciences

Based on, but not limited to the research results of electrical engineering published in the special issue of Science in China Series E, June 2008, this essay gives a brief review on a wide range of state-of-art advancement in electrical engineering field of China, which includes power system modeling, analysis and control, risk assessments in power system, etc. Supported by the National Science Fundation of China (Grant No. 50525721, 50595411), and the National Basic Research Program of China (Grant No. 2004CB217900)     

Differentiation of human embryonic stem cells along a hepatocyte lineage and its application in liver regeneration

Hepatocyte transplantation and bioarUficial liver （BAL） as alternatives to liver transplantation offer the possibility of effective treatment for many inherited and acquired hepatic disorders. Unfortunately, the limited availability of donated livers and the variability of their derived hepatocytes make it difficult to obtain enough viable human hepatocytes for the hepatocyte-based therapies. Embryonic stem cells （ESCs）, which could be isolated directly from the blastocyst inner cell mass, have permanent self-renewal capability and developmental pluripotency and therefore might be an ideal cell source in the treatment of hepatic discords. However, differentiation of hESCs into hepatocytes with significant numbers remains a challenge. This review updates our current understanding of differentiation of ESCs into hepatic lineage cells, their future therapeutic uses and problems in liver regeneration.     

Decoration of C60 nanorods with nickel and their magnetic properties

We studied the coating of C60 nanorods with nickel by electroless plating method and investigated their magnetic properties. The morphology and structure of the nickel layer coated on C60 nanorods were characterized by transmission electron microscopy （TEM）, energy-dispersive X-ray spectroscopy （EDX）, X-ray diffraction （XRD） and Raman spectroscopy. The coated nickel is in the form of nano-sized crystals and becomes a continuous layer as reaction time increases. The hysteresis loop shows a super paramagnetic characteristic similar to that of nanometer-sized nickel particle. These results suggest that the average size of nickel particles on C60 rods is below 10 nm. Our study has shown that electroless plating is an efficient and simple method for coating C60 nanorods with nickel.     

Crack spacing of unsaturated soils in the critical state

The cracking mechanism of unsaturated soils due to evaporation is poorly understood, and the magnitude of crack spacing is usually hard to estimate. In this work, cracks were postulated to occur succedently rather than simultaneously, that is, secondary cracks appear after primary cracks as evaporation continues. Formulae of the secondary crack spacing and secondary trend crack spacing were then derived after stress analysis. The calculated spacing values were consistent with the published experimental data. Meanwhile, the effect of the Poisson ratio on the crack spacing was analyzed, which showed that the magnitude of crack spacing was proportional to the Poisson ratio in the range of [0.30, 0.35].     

Design and demonstration of a 0.22 THz gyrotron oscillator

Gyrotrons are the most powerful terahertz sources and have potential applications in many areas. A terahertz gyrotron oscillator with a pulsed solenoid producing up to an 8 T magnetic field has been designed, constructed and tested. In a 7.96 T magnetic field, 3 kW output power radiations at 0.22 THz frequency have been generated. Supported by the State Key Development Program of Basic Research of China (Grant No. 2007CB310400) and National Natural Science Foundation of China (Grant No. 1067611)     

Near-infrared spectroscopy-based quantification of substrate and aqueous products in wastewater anaerobic fermentation processes

In this study, a Fourier transform near-infrared （FT-NIR） technique was used for process monitoring of anaerobic fermentation. Orthogonal signal correction （OSC） method was used as NIR spectral pre- processing options. Calibration models were established and the validation of the method was per- formed with the sucrose, ethanol and volatile fatty acids （VFAs） contents determined by the anthrone and gas chromatography methods, respectively. Spectral range and the number of internal latent variables were optimized for the best correlation coefficient. Test set validation of sucrose resulted in excellent measurement of prediction performance and the correlation coefficient of determination is 0.930. Similar prediction statistics for individual VFA and total VFA contents were obtained. These re- sults proved that the NIR spectroscopy technology is able to quantify the contents of both volatile fatty acids and sucrose in wastewater anaerobic fermentation process.     

High pressure effects on the crystal structure and electric conductivity of perovskite like（Ca/Sr）2CuO2Cl2 compounds

The crystal structure stability as well as electric conductance of （Sr/Ca）2CuO2Cl2 compound with K2NiF4 structure was investigated up to 31 GPa using diamond anvil technique. It seems that （Sr/Ca）2CuO2Cl2 is quite stable under pressure but with obvious anisotropic compressibility. The equation of state （EOS） obtained shows relative large bulk modulus.     

Application of atomic force microscopy to living samples from cells to fresh tissues

Atomic force microscopy is a novel method for imaging and characterization in biomedicine. However, high-resolution imaging of living samples from cells to tissues still remains a challenge. In this paper, two types of AFM working mode （contact mode and tapping mode） which are utilized for the imaging of living cells and tissues are discussed. A new magnetic tapping mode （MAC mode）, which is more suitable for living samples, and a novel data collecting system named TREC, are also introduced.     

Arbitrarily long distance quantum communication using inspection and power insertion

The biggest obstacle for long distance quantum communication is the channel loss and the channel noise on photons. In this paper, a method to solve this problem was analyzed using inspection and power insertion (IPI). It is proved that quantum communication may be established over arbitrarily long distance using this technology. The amount of resources required is a polynomial function of the distance. IPI is proposed as a general technique to prolong quantum secure direct communication where secret messages are transmitted directly over a quantum channel. Supported by the National Basic Research Program of China (Grant No. 2006CB921106), National Natural Science Foundation of China (Grant No. 10325521) and Key Project of Ministry of Education of China (Grant No. 306020)     

Double-side fabrication process and millimeter wave response of intrinsic Josephson junctions

We adopted double-side fabrication process to prepare intrinsic Josephson junctions (IJJs) based on Bi₂Sr₂CaCu2O_8+x (BSCCO) single crystals. Using crystal cleavage and double-side argon ion milling, we have successfully fabricated very uniform IJJs with the thickness of single crystal slice less than 200 nm. Using quasi-optical system, the response of the IJJs to millimeter wave radiation was studied. With applied magnetic field perpendicular to a-b plane, we have observed Shapiro steps under millimeter wave radiation, and the Josephson oscillation of each junction was phase-locking. Supported by the National Natural Science Foundation of China (Grant Nos. 60571007, 10778602, 60721063, 60610050), National Basic Research Program of China (Grant No. 2006CB601006) and the Fund of Jiangsu Province (Grant No. BK2007713)     

mRNA detection in living cell using phosphorothioate-modified molecular beacon

In this study, GFP mRNA in COS-7 cell and GFP-transfected COS-7 cell was detected in real time using phosphorothioate-modified molecular beacon based on living cell imaging method. Results showed that phosphorothioate-modified molecular beacon still kept the advantages of molecular beacon, such as, excellent selectivity, high sensitivity, and no separation detection. In addition, this modification could significantly increase the nuclease resistance of molecular beacon. Phosphorothioate-modified molecular beacon can efficiently reduce the false positive signal and improve the accuracy of living cell mRNA detection. Supported by the National Key Basic Research Program (Grant No. 2002CB513110), International Technologies Collaboration Program of China (Grant No. 2003DF000039), and National Natural Science Foundation of China (Grant Nos. 90606003 and 20620120107)     

Functional analysis of the sbcD （dr1921 ） gene of the extremely radioresistant bacterium Deinococcus radiodurans

In eukaryotes, the Mre11-Rad50-Nbs1 (MRN) complex, which resides at the crossroads of DNA repair and checkpoint signaling, rapidly forms prominent foci at damage sites following double-strand break (DSB) induction. This complex carries out the initial processing of the DSB ends. Mutations in the genes that encode components of this complex result in DNA-damage hypersensitivity, genomic in- stability, telomere shortening, and aberrant meiosis. Therefore, the MR proteins are highly conserved during evolution. The bacterial orthologs of Mre11 and Rad50 are the SbcD and SbcC proteins, respec- tively. Deinococcus radiodurans, an extremely radioresistant bacterium, is able to mend hundreds of radiation-induced DSBs. The SbcD and SbcC proteins were identified as the products of the Dr1921 and Dr1922 genes. Disruption of the sbcD gene, by direct reverse-orientation insertional mutagenesis tech- nology, remarkably increases the cells’ sensitivity to various types of DNA damaging agents, such as ionizing radiation, ultraviolet irradiation, hydrogen peroxide, and mitomycin C. We also provide evidence that the drSbcD protein plays an important role in both growth and DNA repair in this organ- ism, especially in repair of DSBs generated after cellular exposure to 6000 Gy of IR. These results demonstrate that the drSbcD protein plays an important role in DSBs repair in D. radiodurans.     

Induced pluripotent stem cell (iPS) technology: promises and challenges

In 2006, an article published in Cell by Shinya Yamanaka took by surprise the stem cell research community. By performing systematic retroviral transduction of factors enriched in embryonic stem (ES) cells, the authors demonstrated the reprogramming of mouse fibroblasts into an ES cell-like state. These cells, baptized iPS (induced pluripotent stem) cells, were immediately recognized as a ground-breaking discovery. Subsequently, the same authors and other groups reported a similar achievement with human fibroblasts. Two years later, the number of top quality papers on iPS is astonishing, and interest in the scientific community has risen to a fever pitch. But although iPS has the potential to revolutionize Regenerative Medicine, important questions still remain unanswered. Work from multiple laboratories worldwide including ours is focused on deciphering the molecular mechanisms of iPS, and trying to improve the technique to make it suitable for the clinic. In this review article we briefly discuss the past, present and future of iPS, with emphasis on urgent issues to be solved. Supported by the National Nature Science Foundation of China (Grant Nos. 30725012, 30630039 and 90813033), Knowledge Innovation Project of Chinese Academy of Sciences (Grant No. KSCX2-YW-R-48), National Key Basic Research and Development Program of China (Grant Nos. 2006CB701504, 2006CB943600, 2007CB948002, 2007CB947804. 2007CB947900) and Guangzhou Science and Technology Development Funds (Grant No. 2008A1-E4011)     

Study on the specific interaction between angiogenin and aptamer by atomic force microscopy （AFM）

The specific interaction between angiogenin and aptamer has been investigated by using AFM. The specificity of the interaction is revealed by comparing the binding probability of aptamer to other elements in a series of control experiments. The results have shown that there is specific interaction force between angiogenin and aptamer. Moreover, the single molecular pull-off force between angiogenin and aptamer has also been determined using the Poisson statistical method to be 133.7±11.7 pN. These findings obtained are helpful to the better revelation of recognition mechanism between angiogenin and aptamer, which provided basis for further understanding the inhibition of the aptamer to angiogenic activity.     

Stability study of saturated red polymer light-emitting diodes

Saturated red polymer light-emitting diodes have been fabricated with a single emitting polymer blend layer of poly[2-(2-ethylhexyloxy)-5-methoxy-1,4-phenylenevinylene] (MEH-PPV) and poly[9,9-dioc- tylfluorene-co-4,7-di-2-thienyl-2,1,3-benzothiadiazole] (PFO-DBT15). Saturated red emission with the Commission Internationale de l’Eclairage (CIE) coordinates of (0.67, 0.33) was obtained. The device stability was investigated. The results showed that energy transfer occurred from MEH-PPV to PFO-DBT15, and MEH-PPV improved the hole injection and transportation.