The biogenesis and function of eukaryotic porins

Summary Like most other mitochondrial proteins porin is synthesized in the cytosol and imported posttranslationally into the outer mitochondrial membrane. This transport follows the general rules for mitochondrial, protein import with a few aberrations: a) porin contains an,uncleaved NH₂-terminal signal sequence, b) also its carboxyterminus might be involved in the import process, and c) this transport does not seem to require a membrane potential , although it is ATP-dependent. Most likely the actual import step occurs at contact sites between the outer and the inner mitochondrial membrane and involved at least one receptor protein.Although porin is known to be the major gate through the outer mitochondrial membrane, its absence only causes transient respiratory problems in yeast cells. This could mean a) that there is a bypass for some mitochondrial functions in the cytosol and/or b) that there are alternative channel proteins in the outer membrane. The first idea is supported by the overexpression of cytosolic virus-like particles in yeast cells lacking porin and the second by the occurrence of residual pore activity in mitochondrial outer membrane purified from porinless mutant cells.     

The structure and function of initiation factors in eukaryotic protein synthesis

Protein synthesis is one of the most complex cellular processes, involving numerous translation components that interact in multiple sequential steps. The most complex stage in protein synthesis is the initiation process. It involves initiation factor-mediated assembly of a 40S ribosomal subunit and initiator tRNA into a 48S initiation complex at the initiation codon of an mRNA and subsequent joining of a 60S ribosomal subunit to form a translationally active 80S ribosome. The basal set of factors required for translation initiation has been determined, and biochemical, genetic, and structural studies are now beginning to reveal details of their individual functions in this process. The mechanism of translation initiation has also been found to be influenced significantly by structural properties of the 5' and 3' termini of individual mRNAs. This review describes some of the major developments in elucidating molecular details of the mechanism of initiation that have occurred over the last decade.     

Structure and function of eukaryotic peptide transporters

The cotransport of protons and peptides is now recognised as a major route by which dietary nitrogen is absorbed from the intestine, and filtered protein reabsorbed in the kidney. Recently, molecular biology has had a very substantial impact on the study of peptide transport, and here we review the molecular and functional information available within the framework of physiology. To this end we consider not only the mammalian peptide transporters and their tissue distribution and regulation but also those from other species (including Caenorhabditis elegans) which make up the proton-dependent oligopeptide transport superfamily. In addition, understanding the binding requirements for transported substrates may allow future design and targeted tissue delivery of peptide and peptidomimetic drugs. Finally, we aim to highlight some of the less well understood areas of peptide transport, in the hope that it will stimulate further research into this challenging yet exciting topic.     

The biogenesis of helminthosporal

Zusammenfassung Die Biogenese des Pilzstoffes Helminthosporal wurde untersucht, indem der Pilz bei Anwesenheit von Mevalonsäure, mit C₂ mit Kohlenstoff-14 markiert, gezüchtet wurde. Es wird gezeigt, dass das Dialdehyd aus einem tricyclischen Vorläufer durch oxidative Spaltung entsteht.     

The biogenesis of theTabernanthe iboga alkaloids

Zusammenfassung Die vorliegende Arbeit schlägt eine Biogenese der Tabernanthe-Alkaloide vor, die von einem -Kondensationsprodukt von Tryptophan mit 3,4-Dioxyphenylalanin ausgeht. Der siebengliedrige Ring C dieser Alkaloide entsteht durch Ringöffnung und erneute Ringschliessung eines Oxydationsproduktes. Weitere Stufen umfassen eine Mannich-Kondensation, eine Reduktion und einen Ringschluss zu einer Hydroxycarboxyverbindung, aus der durch einfache Reaktionen Voacangin und Ibogain abgeleitet werden können.

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The Alkaloids ofTabernanthe Iboga, Part V.     

The animal musks and a comment of their biogenesis

Summary The macrocyclic compounds occurring in animal glandular secretions are reviewed. Early hypotheses for their biogenesis from fatty acids via and -oxidations are found to be inadequate. Radio-active acetate was incorporated into macrocyclic ketones of muskrat (Ondatra sp.) preputial glandular secretion, but radiolabelled stearate, oleate, anda, -octadecandioic acid were not incorporated.Acknowledgment. We wish to thank Dr.W.J. Doude van Troostwijk, Research Institute for Nature Management, Arnhem, for his assistance in obtaining muskrats, and Mr J. Vellekoop, Leiden, for the Shakespeare quotations.     

The biogenesis of the morphine alkaloids and related topics

Zusammenfassung Die biologische Entstehung von Thebain und Sinomenin aus zwei enantiomorphen Formen von Laudanin wird zur Diskussion gestellt. Der Schluss der 4,5-Oxyd-Brücke bei 7-Hydroxy-,7-Amino-, Bromo- und 6-Oximino-Verbindungen verläuft analog dem vorgeschlagenen, biologischen Entstehungsweg. Es wird angenommen, dass die Bromierung der 6-Keto-7:8-dihydro-Verbindungen aus der Morphingruppe in Stellung 7 vor sich geht.     

Structure and function of eukaryotic NAD(P)H:nitrate reductase

Pyridine nucleotide-dependent nitrate reductases (NRs; EC 1.6.6.1–3) are molybdenum-containing enzymes found in eukaryotic organisms which assimilate nitrate. NR is a homodimer with an ∼100 kDa polypeptide which folds into stable domains housing each of the enzyme's redox cofactors—FAD, heme-Fe molybdopterin (Mo-MPT) and the electron donor NAD(P)H—and there is also a domain for the dimer interface. NR has two active sites: the nitrate-reducing Mo-containing active site and the pyridine nucleotide active site formed between the FAD and NAD(P)H domains. The major barriers to defining the mechanism of catalysis for NR are obtaining the detailed three-dimensional structures for oxidized and reduced enzyme and more in-depth analysis of electron transfer rates in holo-NR. Recombinant expression of holo-NR and its fragments, including site-directed mutagenesis of key acative site and domain interface residues, are expected to make large contributions to this effort to understand the catalytic mechanism of NR.     

The role of bystin in embryo implantation and in ribosomal biogenesis

Human bystin was identified as a cytoplasmic protein directly binding to trophinin, a cell adhesion molecule potentially involved in human embryo implantation. Although the trophinin gene is unique to mammals, the bystin gene (BYSL) is conserved across eukaryotes. Recent studies show that bystin plays a key role during the transition from silent trophectoderm to an active trophoblast upon trophinin-mediated cell adhesion. Bystin gene knockout and knockdown experiments demonstrate that bystin is essential for embryonic stem cell survival and trophectoderm development in the mouse. Furthermore, biochemical analysis of bystin in human cancer cells and mouse embryos indicates a function in ribosomal biogenesis, specifically in processing of 18S RNA in the 40S subunit. Strong evidence that BYSL is a target of c-MYC is consistent with a role for bystin in rapid protein synthesis, which is required for actively growing cells. Received 30 June 2007; received after revision 7 August 2007; accepted 29 August 2007     

Mechanism of tryptophane biogenesis and decomposition

Zusammenfassung Für den biosynthetischen Vorgang: Indol + Serin Tryptophan wird ein detaillierter chemischer Reaktionsverlauf vorgeschlagen. Der Verlauf des Abbaus von Tryptophan zu Indol, Brenztraubensäure und Ammoniak wird in ähnlicher Weise gedeutet.     

Structure,function and evolution of haspin and haspinrelated proteins,a distinctive group of eukaryotic protein kinases

The haspins constitute a newly defined protein family containing a distinctive C-terminal eukaryotic protein kinase domain and divergent N termini. Haspin homologues are found in animals, plants and fungi, suggesting an origin early in eukaryotic evolution. Most species have a single haspin homologue. However, Saccharomyces cerevisiae has two such genes, while Caenorhabditis elegans has at least three haspin homologues and approximately 16 haspin-related genes. Mammalian haspin genes have features of retrogenes and are strongly expressed in male germ cells and at lower levels in some somatic tissues. They encode nuclear proteins with serine/threonine kinase activity. Murine haspin is reported to inhibit cell cycle progression in cell lines. One of the S. cerevisiae homologues, ALK1, is a member of the CLB2 gene cluster that peaks in expression at M phase and thus may function in mitosis. Therefore, the haspins are an intriguing group of kinases likely to have important roles during or following both meiosis and mitosis.     

Routes and machinery of primary cilium biogenesis

Primary cilia are solitary, microtubule-based protrusions of the cell surface that play fundamental roles as photosensors, mechanosensors and biochemical sensors. Primary cilia dysfunction results in a long list of developmental and degenerative disorders that combine to give rise to a large spectrum of human diseases affecting almost any major body organ. Depending on the cell type, primary ciliogenesis is initiated intracellularly, as in fibroblasts, or at the cell surface, as in renal polarized epithelial cells. In this review, we have focused on the routes of primary ciliogenesis placing particular emphasis on the recently described pathway in renal polarized epithelial cells by which the midbody remnant resulting from a previous cell division event enables the centrosome for initiation of primary cilium assembly. The protein machinery implicated in primary cilium formation in epithelial cells, including the machinery best known for its involvement in establishing cell polarity and polarized membrane trafficking, is also discussed.