Quantitative genetic models of sexual selection

Quantitative genetic models of sexual selection have disproven some of the central tenets of both the handicap mechanism and the 'sexy son' hypothesis. These results suggest that the 'good genes' approach to sexual selection may generally lead to erroneous results. Runaway sexual selection seems possible under a wide variety of circumstances. Quantitative genetic models have revealed runaway processes for sexually selected attributes expressed in both sexes and for attributes of parental care. Furthermore, the runaway could occur simultaneously in a series of populations that straddle an environmental gradient. While the models support the feasibility of runaway processes, empirical studies are needed to evaluate whether runaways actually happen. Estimates of critical genetic parameters are particularly needed, as well as measures of natural and sexual selection acting on the same population. The models also show that sexual selection has tremendous potential to produce population differentiation, particularly in epigamic traits. Differentiation is promoted by indeterminancy of evolutionary outcome, transient differences among populations during the final slow approach to equilibrium, sampling drift among equilibrium populations, and the tendency of sexual selection to amplify geographic variation arising from spatial differences in natural selection. Recent work with two- and three-locus models of sexual selection has produced results that parallel the results of the polygenic models. Thus the feature of indeterminate equilibria (outcome dependent on initial conditions) is common to both types of model.     

Development and characterization of small bispecific albumin-binding domains with high affinity for ErbB3

Affinity proteins based on small scaffolds are currently emerging as alternatives to antibodies for therapy. Similarly to antibodies, they can be engineered to have high affinity for specific proteins. A potential problem with small proteins and peptides is their short in vivo circulation time, which might limit the therapeutic efficacy. To circumvent this issue, we have engineered bispecificity into an albumin-binding domain (ABD) derived from streptococcal Protein G. The inherent albumin binding was preserved while the opposite side of the molecule was randomized for selection of high-affinity binders. Here we present novel ABD variants with the ability to bind to the epidermal growth factor receptor 3 (ErbB3). Isolated candidates were shown to have an extraordinary thermal stability and affinity for ErbB3 in the nanomolar range. Importantly, they were also shown to retain their affinity to albumin, hence demonstrating that the intended strategy to engineer bispecific single-domain proteins against a tumor-associated receptor was successful. Moreover, competition assays revealed that the new binders could block the natural ligand Neuregulin-1 from binding to ErbB3, indicating a potential anti-proliferative effect. These new binders thus represent promising candidates for further development into ErbB3-signaling inhibitors, where the albumin interaction could result in prolonged in vivo half-life.     

Population biology of figs: Applications for conservation

Summary The flowering phenology typical of at least monoecious figs-intra-tree synchrony and inter-tree asynchrony-poses problems for persistence of the pollinator population, and hence of the fig population itself, when fig population size is small. Establishment and maintenance of a population of the short-lived, species-specific wasp pollinator require that the fig population include a critical minimum number of trees (critical population size: CPS). Below CPS, temporal gaps between flowering trees occur that are unbridgeable by the pollinator, leading to its local extinction. This has implications for conservation in two contexts: human-aided invasions of introduced fig/wasp pairs, in which initial populations of figs and/or wasps may be small, and the persistence of figs and wasps in fragmented forest, in which initially large populations may be drastically reduced. Long-distance range extension by fig/wasp pairs is problematical for two reasons: 1) the fig species must first attain CPS, most likely through repeated seed dispersal events, before the wasp can establish; and 2) long-distance transit should be difficult for the tiny, short-lived wasp pollinators. I review the biology of natural and human-aided range extension by figs and fig wasps, and show that in human-aided range extensions these two difficult steps are circumvented. Once introduced into an area where hosts are abundant, fig wasps should readily establish from a small number of initial colonists, since they mate before dispersal and are highly tolerant of inbreeding. They are thus less subject than many insects to the genetic and demographic hazards of small population size. Of 5–6 fig/wasp pairs that have performed human-aided long-distance range extensions, one Asian pair,Ficus microcarpa and its pollinatorParapristina verticillata, is established in numerous areas in the northern neotropics, and the plant may become a serious weed. In tropical forests, figs may provide keystone resources for frugivores, providing fruit during seasons when other resources are scarce. Figs pose difficult problems for conservation biology, since minimum viable populations appear to be large, and since many species of tropical rainforests occur at low densities. This means that minimum areas required for persistence of a fig population- and for those of other species that would be affected were figs to be removed from the system-may often be large.     

Quantitative genetic models of sexual selection

Summary Quantitative genetic models of sexual selection have disporven some of the central tenets of both the handicap mechanism and the sexy son hypothesis. These results suggest that the good genes approach to sexual selection may generally lead to erroneous results.Runaway sexual selection seems possible under a wide variety of circumstances. Quantittive genetic models have revealed runaway processes for sexually selected attributes expressed in both sexes and for attributes of parental care. Furthermore, the runaway could occur simultaneously in a series of populations that straddle an environmental gradient. While the models support the feasibility of runaway processes, empirical studies are needed to evaluate whether runaways actually happen. Estimates of critical genetic parameters are particularly needed, as well as measures of natural and sexual selection acting on the same population.The models also show that sexual selection has tremendous potential to produce population differentiation, particularly in epigamic traits. Differentiation is promoted by indeterminancy of evolutionary outcome, transient differences among populations during the final slow approach to equilibrium, sampling drift among equilibrium populations, and the tendency of sexual selection to amplify geographic variation arising from spatial differences in natural selection. Recent work with two- and three-locus models of sexual selection has produced results that parallel the results of the polygenic models^36–38,58. Thus the feature of indeterminate equilibria (outcome dependent on initial conditions) is common to both types of model.     

Natural selection and the ‘antiquity of man’: Intellectual impacts in the Australian colonies

Two months before the publication of Charles Darwin's On the Origin of Species (1859), Scottish geologist Charles Lyell announced a consensus on ‘the antiquity of man.’ Although stemming from separate intellectual traditions, human antiquity and natural selection had such a powerful influence on nineteenth century science that the former is often thought to be an inevitable conceptual and chronological consequence of the latter. Various scholars have argued it was in fact the acceptance of human antiquity that provided a foundation for the intelligibility and eventual acceptance of evolution by natural selection. This article investigates how these two interwoven theories affected understandings of human antiquity in Australia; itself an under-examined topic in Australian scholarship. Indeed, most historians maintain Australia's human antiquity was not ‘discovered’ or broadly understood until the advent of radiocarbon dating and professional archaeology in the 1960s. This over-simplified narrative has only recently begun to be reassessed. To contribute to this reassessment, and to the broader reclamation of human antiquity as a historical subject, this article focuses on the early decades of human antiquity's dissemination in Australia, examines its complex relationship with natural selection, and ultimately challenges narratives of its ‘recent’ discovery.     

Francis Galton’s regression towards mediocrity and the stability of types

A prevalent narrative locates the discovery of the statistical phenomenon of regression to the mean in the work of Francis Galton. It is claimed that after 1885, Galton came to explain the fact that offspring deviated less from the mean value of the population than their parents did as a population-level statistical phenomenon and not as the result of the processes of inheritance. Arguing against this claim, we show that Galton did not explain regression towards mediocrity statistically, and did not give up on his ideas regarding an inheritance process that caused offspring to revert to the mean. While the common narrative focuses almost exclusively on Galton’s statistics, our arguments emphasize the anthropological and biological questions that Galton addressed. Galton used regression towards mediocrity to support the claim that some biological types were more stable than others and hence were resistant to evolutionary change. This view had implications concerning both natural selection and eugenics. The statistical explanation attributed to Galton appeared later, during the biometrician-mutationist debate in the early 1900s. It was in the context of this debate and specifically by the biometricians, that the development of the statistical explanation was originally attributed to Galton.     

基于遥感的黄土丘陵沟壑区人口密度分布模拟——以甘肃省榆中县为例

基于“面向对象”的人口分配原则,通过扩展的城市人口-面积异速生长模型,以SPOT5遥感影像为基本数据源,提取居民地信息;以榆中县为例,建立居民地分类体系,采取城乡人口分割算法,以人口统计数据为总量控制建立了人口分布的反演模型,模拟了榆中县域人口的空间分布。研究方法可为黄土丘陵沟壑区中尺度人口分布模拟的理论与应用研究提供借鉴。     

The matches, achieved by natural selection, between biological capacities and their natural loads.

Natural selection tends to eliminate unutilized capacities because of their costs. Hence we ask how large are the reserve capacities by which biological capacities exceed natural loads, and how closely are related biological capacities matched to each other. Measured capacities (Vmax values) of small intestinal brush-border nutrient transporters are typically around twice their natural loads (dietary intakes of their substrates); the ratio is higher for a transporter of a hyperessential nutrient. Preliminary evidence suggests matching of capacities between different steps in carbohydrate metabolism, and between the intestine, liver, kidneys, and spleen. Symmorphosis - the postulated matching of capacities to each other and to loads - is a testable hypothesis of economic design, useful in detecting and explaining cases of apparently uneconomic design.     

Function,persistence, and selection: Generalizing the selected-effect account of function adequately

The selected effect account is regarded by many as one of the most attractive accounts of function. This account assumes that the function of a trait is what it has been selected for. Recently, it has been generalized by Justin Garson to include cases in which selection is understood as a simple sorting process, i.e., a selection process between entities that do not reproduce. However, once extended, this generalized selected effect account seems to ascribe functions to entities for which it looks unintuitive to do so. For instance, the hardness of rocks on a beach being differentially eroded by waves would be ascribed the function of resisting erosion. Garson provides one central argument why, despite appearance, one should not ascribe functions in cases of such sorting processes. In this paper, I start by presenting his argument, which hinges on whether a collection of entities form a population. I find it wanting. I argue instead that some selection processes are evolutionarily more or less interesting and that when a selection process is regarded as evolutionarily uninteresting, it will yield an uninteresting form of function rather than a reason for withholding the concept of function altogether.     

The matches,achieved by natural selection,between biological capacities and their natural loads

Natural selection tends to eliminate unutilized capacities because of their costs. Hence we ask how large are the reserve capacities by which biological capacities exceed natural loads, and how closely are related biological capacities matched to each other. Measured capacities (V_max values) of small intestinal brush-border nutrient transporters are typically around twice their natural loads (dietary intakes of their substrates); the ratio is higher for a transporter of a hyperessential nutrient. Preliminary evidence suggests matching of capacities between different steps in carbohydrate metabolism, and between the intestine, liver, kidneys, and spleen. Symmorphosis — the postulated matching of capacities to each other and to loads — is a testable hypothesis of economic design, useful in detecting and explaining cases of apparently uneconomic design.     

The Gaia hypothesis: A fruitful fallacy?

Summary In 1968, Lovelock proposed that the Earth's biosphere, atmosphere, oceans, and soils form a single living organism, which he called Gaia after the Greek Earth goddess. This entity constitutes a feedback system which supposedly seeks an optimal physical and chemical environment for life on Earth. Most scientists accept a weaker version of the hypothesis, that life has had a tremendous impact on the physical environment. They reject the strong version on the basis that planetary self-regulation would need foresight and planning by living organisms, which is incompatible with natural selection. Lovelock subsequently proposed a simple computer model, called Daisyworld, which shows that, under certain conditions, feedback systems without foresight can stabilize external inputs. The main value of the Gaia hypothesis lies in its holistic perspective, which is needed to avoid environmentally undesirable, cumulative effects of small decisions.     

Taking Simmel seriously in evolutionary epistemology

Donald T. Campbell outlines an epistemological theory that attempts to be faithful to evolution through natural selection. He takes his position to be consistent with that of Karl R. Popper, whom he credits as the primary advocate of his day for natural selection epistemology. Campbell writes that neither he nor Popper want to give up the goal of objectivity or objective truth, in spite of their evolutionary epistemology. In discussing the conflict between an epistemology based on natural selection and objective truth, Campbell cites an article by the German sociologist and philosopher Georg Simmel entitled ‘On a Connection of Selection Theory to Epistemology’, as presenting the issue in a notably forthright manner.The present essay summarizes Simmel's article, with the purpose of clarifying, in terms that Campbell apparently finds satisfactory, the conflict that Campbell acknowledges between an evolutionary epistemology and ultimate truth; the essay then examines the responses of Campbell and Popper to Simmel's position. While Campbell and Popper acknowledge the work of Simmel, their responses suggest something less than a full consideration of Simmel's position.     

The Advantages of Obscurity: Charles Darwin's Negative Inference from the Histories of Domestic Breeds

In The Origin of Species, Charles Darwin famously accounted for the lack of fossil evidence in support of species evolution on the grounds that the fossil record is naturally incomplete. This essay examines a similar argument that Darwin applied to his analogy between natural and artificial selection: the scarcity of data about the historical backgrounds of domestic breeds was the natural by-product of an extremely gradual change process. The point was to enhance the ability of the artificial selection analogy to suggest that nature's species had undergone a similar transformation. Darwin did not depend on this negative inference alone, however, for in his writings he included whatever information he could find about the actual histories of particular breeds. A comparison with Darwin's treatment of the fossil record suggests the reasonableness of this combined use of opposite kinds of evidence to establish a single point. The comparison also suggests the unique qualities of negative inference as applied to the breeding analogy.     

Charles Darwin and group selection

The question of the levels at which natural selection can be said to operate is much discussed by biologists today and is a key factor in the recent controversy about sociobiology. It is shown that this problem is one to which Charles Darwin addressed himself at some length. It is argued that apart from some slight equivocation over man, Darwin opted firmly for hypotheses supposing selection always to work at the level of the individual rather than the group. However, natural selection's co-discoverer, Alfred Russel Wallace, endorsed group selection hypotheses.     

近56年果洛州人口集中度变化及原因分析

江河源区是我国冰冻圈极其重要的组成部分,基于冻土环境的寒区生态系统异常脆弱,从人口集中度的变化出发,以黄河源果洛州近56年以来“区域人口集中度”的变化为例,探讨江河源区人口集中度变化的原因。研究结果表明,生态移民工程、小城镇的建设、游牧定居工程以及后续产业建设对人口集中度有重要影响。     

The complement system in age-related macular degeneration

Age-related macular degeneration (AMD) is a chronic and progressive degenerative disease of the retina, which culminates in blindness and affects mainly the elderly population. AMD pathogenesis and pathophysiology are incredibly complex due to the structural and cellular complexity of the retina, and the variety of risk factors and molecular mechanisms that contribute to disease onset and progression. AMD is driven by a combination of genetic predisposition, natural ageing changes and lifestyle factors, such as smoking or nutritional intake. The mechanism by which these risk factors interact and converge towards AMD are not fully understood and therefore drug discovery is challenging, where no therapeutic attempt has been fully effective thus far. Genetic and molecular studies have identified the complement system as an important player in AMD. Indeed, many of the genetic risk variants cluster in genes of the alternative pathway of the complement system and complement activation products are elevated in AMD patients. Nevertheless, attempts in treating AMD via complement regulators have not yet been successful, suggesting a level of complexity that could not be predicted only from a genetic point of view. In this review, we will explore the role of complement system in AMD development and in the main molecular and cellular features of AMD, including complement activation itself, inflammation, ECM stability, energy metabolism and oxidative stress.

     

Impact of corrections for dynamic selection bias on forecasts of retention behavior

We investigate the impact of corrections for dynamic selection bias on forecasting accuracy in a multi‐period stay/leave model. While corrections for selection bias are needed for consistent coefficient estimates, they do not necessarily produce more accurate forecasts than uncorrected techniques. Theorem 1 shows that, apart from estimation errors, a shrinkage principle applies: the heterogeneity restriction imposed by uncorrected and combination techniques improves accuracy for forecasting individuals that leave, and hurts accuracy for forecasting individuals that stay. This has important implications for decision making because of the potential for asymmetric losses. We also present an illustrative empirical application and results from Monte Carlo experiments. We find that differences in relative accuracy vary directly with the degree of selection bias and inversely with the percentage of the initial population that stays. Copyright © 2007 John Wiley & Sons, Ltd.     

Structure and function of small heat shock/alpha-crystallin proteins: established concepts and emerging ideas

Small heat shock/alpha-crystallin proteins are defined by conserved sequence of approximately 90 amino acid residues, termed the alpha-crystallin domain, which is bounded by variable amino- and carboxy-terminal extensions. These proteins form oligomers, most of uncertain quaternary structure, and oligomerization is prerequisite to their function as molecular chaperones. Sequence modelling and physical analyses show that the secondary structure of small heat shock/alpha-crystallin proteins is predominately beta-pleated sheet. Crystallography, site-directed spin-labelling and yeast two-hybrid selection demonstrate regions of secondary structure within the alpha-crystallin domain that interact during oligomer assembly, a process also dependent on the amino terminus. Oligomers are dynamic, exhibiting subunit exchange and organizational plasticity, perhaps leading to functional diversity. Exposure of hydrophobic residues by structural modification facilitates chaperoning where denaturing proteins in the molten globule state associate with oligomers. The flexible carboxy-terminal extension contributes to chaperone activity by enhancing the solubility of small heat shock/alpha-crystallin proteins. Site-directed mutagenesis has yielded proteins where the effect of the change on structure and function depends upon the residue modified, the organism under study and the analytical techniques used. Most revealing, substitution of a conserved arginine residue within the alpha-crystallin domain has a major impact on quaternary structure and chaperone action probably through realignment of beta-sheets. These mutations are linked to inherited diseases. Oligomer size is regulated by a stress-responsive cascade including MAPKAP kinase 2/3 and p38. Phosphorylation of small heat shock/alpha-crystallin proteins has important consequences within stressed cells, especially for microfilaments.