Unequal crossing over in the ribosomal DNA of Saccharomyces cerevisiae

Unequal sister chromatid exchanges occur at the ribosomal DNA locus of yeast during mitotic growth. The frequency of unequal crossing over, as measured by the deletion or duplication of an inserted genetic marker (LEU2), is sufficient to maintain the sequence homogeneity of the rDNA repeat units.     

从椭圆酿酒酵母中提取核酸

采用正交设计试验等方法研究了从椭圆酿酒酵母（Saccharomyces cerevisiae）中提取RNA的适宜条件为NaOH浓度1．5％,SDS浓度2％,NaCl浓度4％,抽提温度95℃,抽提时间2h。RNA粗品收率85．1％,纯度90．5％,可满足核苷酸的生产要求。     

突变野油菜黄单胞菌α-淀粉酶基因在酿酒酵母中的整合表达

用定向进化的一种新方法,对野油菜黄单胞菌(Xanthomonas campestris pv.campestris)的α-淀粉酶基因(XAMY)进行PCR体外诱变后获得了一个编码的酶活性提高的突变基因,将其克隆到由rDNA序列介导的酵母整合型表达载体pHBM368上,得到重组质粒pHBM368XA.将pHBM368XA转化酿酒酵母S.cerevisiae INVScⅠ,获得了整合型分泌表达α-淀粉酶的酵母重组菌株XA01.对选择的3个工程菌α-淀粉酶表达的稳定性进行了检测,结果表明在完全培养基中连续培养80代,淀粉酶的酶活性仍然保持稳定.在淀粉酶自身信号肽引导下,胞外分泌效率可达50%.     

Chromatin remodelling at a DNA double-strand break site in Saccharomyces cerevisiae

The repair of DNA double-strand breaks (DSBs) is crucial for maintaining genome stability. Eukaryotic cells repair DSBs by both non-homologous end joining and homologous recombination. How chromatin structure is altered in response to DSBs and how such alterations influence DSB repair processes are important issues. In vertebrates, phosphorylation of the histone variant H2A.X occurs rapidly after DSB formation, spreads over megabase chromatin domains, and is required for stable accumulation of repair proteins at damage foci. In Saccharomyces cerevisiae, phosphorylation of the two principal H2A species is also signalled by DSB formation, which spreads approximately 40 kb in either direction from the DSB. Here we show that near a DSB phosphorylation of H2A is followed by loss of histones H2B and H3 and increased sensitivity of chromatin to digestion by micrococcal nuclease; however, phosphorylation of H2A and nucleosome loss occur independently. The DNA damage sensor MRX is required for histone loss, which also depends on INO80, a nucleosome remodelling complex. The repair protein Rad51 (ref. 6) shows delayed recruitment to DSBs in the absence of histone loss, suggesting that MRX-dependent nucleosome remodelling regulates the accessibility of factors directly involved in DNA repair by homologous recombination. Thus, MRX may regulate two pathways of chromatin changes: nucleosome displacement for efficient recruitment of homologous recombination proteins; and phosphorylation of H2A, which modulates checkpoint responses to DNA damage.     

Expression of the SOD gene from Trichoderma harzianum in Saccharomyces cerevisiae

Superoxide dismutases are metalloproteins which play a major role in defense against oxygen radicalmediated toxicity in aerobic organisms. Such proteins are important endogeneity cytoprotection factor involving defence. A 751-bp full-length cDNA sequence of an SOD gene was isolated from the Trichoderma harzianum. The full-length cDNA of the SOD gene consists of one 465-bp open reading frame nucleotide, which encodes a 15.7-kDa polypeptide consisting of 154 amino acid residues. Sequence analysis revealed that SOD gene has more than 72%-86% amino acid sequence homology with those of other fungi. The SOD gene was integrated into the genomic DNA of pYES2 by insertion into a single site for recombination, yielding the recombinant pYES2-SOD. SOD expressed by pYES2-SOD was induced by galactose. We test whether SOD could offer abiotic stress resistance when it was introduced into yeast ceils. A transgenic yeast harboring T. harzianum SOD was generated under the control of a constitutively expressed GAL promoter. The results indicated that SOD yeast transformants had significantly higher resistance to salt and drought stress.     

Plasmids from Staphylococcus aureus replicate in yeast Saccharomyces cerevisiae

It is known that some plasmids, such as RP4, can replicate in many Gram-negative bacteria. Certain small Staphylococcus aureus plasmids have an even broader host range, being able to replicate in not only phylogenetically distant Gram-positive bacteria such as Bacillus subtilis or Streptococcus pneumoniae, but also in the Gram-negative bacterium Escherichia coli. Here we have examined whether these plasmids can also replicate in a lower eukaryote, the yeast Saccharomyces cerevisiae. For this purpose we constructed hybrids between a S. aureus plasmid pC194 and an E. coli plasmid YIp5, which carries a ura-3 gene easy to select for in yeast but cannot replicate in this host. We found that the hybrids transformed yeast with high efficiency (as did hybrids between YIp5 and three other S. aureus plasmids); were maintained extrachromosomally in yeast; and were not modified during residence in yeast. We conclude from this evidence that S. aureus plasmids can replicate in yeast, which raises the questions of whether the replication signals used by prokaryotes and eukaryotes are similar, and how far up the phylogenetic tree the organisms still able to be hosts to S. aureus plasmids may be.     

Homing of a DNA endonuclease gene by meiotic gene conversion in Saccharomyces cerevisiae.

An unusual protein splicing reaction joins the N-terminal segment (A) and the C-terminal segment (C) of the 119K primary translation product (ABC) of the yeast VMA1 gene to yield a 69K vacuolar H(+)-ATPase subunit (AC) and an internal 50K polypeptide (B). This 50K protein is a site-specific DNA endonuclease that shares 34% identity with the homothallic switching endonuclease. The site cleaved by the VMA1-derived endonuclease exists in a VMA1 allele that lacks the derived endonuclease segment of the open reading frame. Cleavage at this site only occurs during meiosis and initiates 'homing', a genetic event that converts a VMA1 allele lacking the endonuclease coding sequence into one that contains it.     

rDNA介导的多拷贝整合表达载体的构建及其在酿酒酵母工业菌株中的应用

根据酵母整合质粒的设计要求,PCR扩增特定的2．2kb rDNA片段,并以此替换酿酒酵母(Saccharomyces cereristae)整合载体YIp5的URA3片段;在此基础上,引入G418抗性基因KanMX和酵母磷酸甘油激酶(phosphoglycerale kinase,PGK)组成型强启动子和终止子序列(PGKp-t),构建适合酿酒酵母工业菌株高拷贝整合表达载体pYMIKP,以细菌木糖异构酶(xylose isomerase,XI)基因xy/A为目标基因,通过载体pYMIKP引入到酵母工业菌株NAN-27中,酵母转化子在非选择培养条件下,连续生长50世代质粒稳定性为99．72％,目标基因高拷贝重组菌的木糖异构酶比酶活是对照菌株的67．2倍,达到0．672U／mg蛋白,实现了外源基因在酿酒酵母工业菌株中的稳定高效表达。     

ras-Related gene sequences identified and isolated from Saccharomyces cerevisiae

The oncogenes of Harvey and Kirsten murine sarcoma viruses (v-rasH and v-rasK) and their cellular homologues (c-rasH and c-rasK) constitute two members of the ras gene family. Each functional member of the ras gene family encodes a 21,000 molecular weight protein (p21ras). ras genes have been detected in a wide variety of vertebrate species, including Xenopus laevis (R. E. Steele, personal communication), and in Drosophila melanogaster. We report here the detection of ras-related genes in the yeast Saccharomyces cerevisiae, and the isolation of two ras-related molecular clones, c-rassc-1 and c-rassc-2, from the DNA of Saccharomyces. Both c-rassc-1 and c-rassc-2 hybridize specifically to probes prepared from mammalian ras DNA. Sequencing of c-rassc-1 reveals extensive amino acid homology between the protein encoded by c-rassc-1 and the p21 encoded by c-rasH. Our studies suggest that these clones can be used to elucidate the normal cellular functions of ras-related genes in this relatively simple eukaryotic organism.     

Functional profiling of the Saccharomyces cerevisiae genome

Determining the effect of gene deletion is a fundamental approach to understanding gene function. Conventional genetic screens exhibit biases, and genes contributing to a phenotype are often missed. We systematically constructed a nearly complete collection of gene-deletion mutants (96% of annotated open reading frames, or ORFs) of the yeast Saccharomyces cerevisiae. DNA sequences dubbed 'molecular bar codes' uniquely identify each strain, enabling their growth to be analysed in parallel and the fitness contribution of each gene to be quantitatively assessed by hybridization to high-density oligonucleotide arrays. We show that previously known and new genes are necessary for optimal growth under six well-studied conditions: high salt, sorbitol, galactose, pH 8, minimal medium and nystatin treatment. Less than 7% of genes that exhibit a significant increase in messenger RNA expression are also required for optimal growth in four of the tested conditions. Our results validate the yeast gene-deletion collection as a valuable resource for functional genomics.     

金堂黑山羊FSH受体基因在酿酒酵母细胞中的表达与定位

通过激光共聚焦显微镜对卵泡刺激素受体（FSHR）FSHRA和FSHRB与绿色荧光蛋白（GFP）的融合蛋白的表达和定位进行观察,发现FSHRA和FSHRB不仅在酿酒酵母细胞中有表达,而且表达的蛋白质主要定位在酵母的细胞膜上.     

酿酒酵母中D-(-)-扁桃酸脱氢酶性质研究

采用DEAE Sepharose离子交换层析、Butyl Sepharose疏水层析和Blue Sepharose亲和层析等分离方法,从高产D-(-)-扁桃酸的酵母菌株BY1.1b中纯化得到电泳纯的D-(-)-扁桃酸脱氢酶.采用Sephacryl S-200分子筛层析柱测得该酶的相对分子质量约60 kDa,用SDS-PAGE电泳测得该酶亚基分子量为32 kDa,表明该酶属于同型二聚体.该酶的最适反应温度为30℃,最适反应pH为6.0.该酶在低于30℃,pH5.5~8.0较为稳定.以NADH和苯乙酮酸为底物,其Km值分别为Km(NADH)=99.2μmol/L和Km(苯乙酮酸)=263.3μmol/L.     

Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

Identification of protein-protein interactions often provides insight into protein function, and many cellular processes are performed by stable protein complexes. We used tandem affinity purification to process 4,562 different tagged proteins of the yeast Saccharomyces cerevisiae. Each preparation was analysed by both matrix-assisted laser desorption/ionization-time of flight mass spectrometry and liquid chromatography tandem mass spectrometry to increase coverage and accuracy. Machine learning was used to integrate the mass spectrometry scores and assign probabilities to the protein-protein interactions. Among 4,087 different proteins identified with high confidence by mass spectrometry from 2,357 successful purifications, our core data set (median precision of 0.69) comprises 7,123 protein-protein interactions involving 2,708 proteins. A Markov clustering algorithm organized these interactions into 547 protein complexes averaging 4.9 subunits per complex, about half of them absent from the MIPS database, as well as 429 additional interactions between pairs of complexes. The data (all of which are available online) will help future studies on individual proteins as well as functional genomics and systems biology.