Electronic tagging and population structure of Atlantic bluefin tuna

Electronic tags that archive or transmit stored data to satellites have advanced the mapping of habitats used by highly migratory fish in pelagic ecosystems. Here we report on the electronic tagging of 772 Atlantic bluefin tuna in the western Atlantic Ocean in an effort to identify population structure. Reporting electronic tags provided accurate location data that show the extensive migrations of individual fish (n = 330). Geoposition data delineate two populations, one using spawning grounds in the Gulf of Mexico and another from the Mediterranean Sea. Transatlantic movements of western-tagged bluefin tuna reveal site fidelity to known spawning areas in the Mediterranean Sea. Bluefin tuna that occupy western spawning grounds move to central and eastern Atlantic foraging grounds. Our results are consistent with two populations of bluefin tuna with distinct spawning areas that overlap on North Atlantic foraging grounds. Electronic tagging locations, when combined with US pelagic longline observer and logbook catch data, identify hot spots for spawning bluefin tuna in the northern slope waters of the Gulf of Mexico. Restrictions on the time and area where longlining occurs would reduce incidental catch mortalities on western spawning grounds.     

大襟岛海域中华白海豚栖息地重金属含量测定与评价

分别对中华白海豚栖息地的海水、表层沉积物和生物(鱼类、甲壳类和软体类动物)体中的重金属含量进行测定与污染评价.结果表明,海洋生物对海水和沉积物中重金属有较强的富集能力,中华白海豚其肝脏中高浓度的重金属含量是通过食物链(网)而逐级积累的.栖息地中海水质量介于海水I类与II类水质之间,表层沉积物质量符合I类标准,3类不同类...     

增殖放流对石岛近海三疣梭子蟹遗传特征的影响

为了解增殖放流后山东石岛近海三疣梭子蟹(Portunus trituberculatus)遗传特征的变化情况,对采自石岛近海2016年和2020年两个年份三疣梭子蟹群体的遗传多样性和遗传结构进行分析。结果显示:两个群体的单倍型多样性均较高,表现出较高的遗传多样性;群体间遗传分化指数FST值显示群体内部遗传差异大于群体间,且统计检验不显著,表明两群体间无明显遗传分化;分子方差分析（AMOVA）结果和单倍型邻接系统发育树（NJ）也显示两群体间无明显遗传分化。由此可得,经增殖放流,石岛近海2016—2020年三疣梭子蟹群体遗传多样性较高并未发生显著的遗传分化,种质资源较好。     

Conservation of polymorphic simple sequence loci in cetacean species

Length polymorphisms within simple-sequence loci occur ubiquitously in non-coding eukaryotic DNA and can be highly informative in the analysis of natural populations. Simple-sequence length polymorphisms (SSLP) in the long-finned pilot whale Globicephala melas (Delphinidae) have provided useful information on the mating system as well as on the genetic structure of populations. We have therefore tested whether the polymerase chain reaction primers designed for Globicephala could also be used to uncover variability in other whale species. Homologous loci could indeed be amplified from a diverse range of whales, including all toothed (Odontoceti) and baleen whales (Mysticeti) tested. Cloning and sequencing these loci from 11 different species revealed an unusually high conservation of sequences flanking the simple-sequence stretches, averaging 3.2% difference over 35-40 Myr. This represents the lowest divergence rate for neutral nucleotide positions found for any species group so far and raises the possible need for a re-evaluation of the age of the modern whales. On the other hand, the high conservation of non-coding sequences in whales simplifies the application of SSLP DNA fingerprinting in cetacean species, as primers designed for one species will often uncover variability in other species.     

Basal body movements as a mechanism for mitochondrial genome segregation in the trypanosome cell cycle

The mitochondrial genome of Trypanosoma brucei is organized in the form of a complex catenated network of circular DNA molecules. This mass of DNA, known as the kinetoplast, is present at a unique site in the single mitochondrion, and is replicated in a discrete, periodic S phase of the cell cycle. The single-copy nature of the kinetoplast suggests that there is a mechanism ensuring segregation fidelity of replicated copies to each daughter cell. Historically, speculation regarding the nature of this mechanism has often attributed significance to the close association between the kinetoplast and the flagellum basal body. We provide here direct evidence that this mitochondrial DNA complex is indeed linked to the basal body, and segregation of the kinetoplast DNA is dependent on a microtubule-mediated separation of the new and old flagellar basal bodies during the cell cycle. This unique system may represent the remnants of an evolutionarily archaic mechanism for genome segregation.     

Nitrogen cycle: what governs nitrogen loss from forest soils?

Nitrogen is lost as dissolved organic compounds in stream waters from unpolluted South American forests, but it is lost mainly as inorganic nitrate in streams flowing from North American forests that suffer nitrogen deposition from the atmosphere. From this it has been inferred that the standard thinking about how nature deals with nitrogen in soils and waters needs to be re-evaluated and that the conventional wisdom of how nitrogen is absorbed and released by plants must be wrong. We disagree, however, on the grounds that there are other, more likely interpretations of the new results.     

SAR11 clade dominates ocean surface bacterioplankton communities

The most abundant class of bacterial ribosomal RNA genes detected in seawater DNA by gene cloning belongs to SAR11-an alpha-proteobacterial clade. Other than indications of their prevalence in seawater, little is known about these organisms. Here we report quantitative measurements of the cellular abundance of the SAR11 clade in northwestern Sargasso Sea waters to 3,000 m and in Oregon coastal surface waters. On average, the SAR11 clade accounts for a third of the cells present in surface waters and nearly a fifth of the cells present in the mesopelagic zone. In some regions, members of the SAR11 clade represent as much as 50% of the total surface microbial community and 25% of the subeuphotic microbial community. By extrapolation, we estimate that globally there are 2.4 x 10(28) SAR11 cells in the oceans, half of which are located in the euphotic zone. Although the biogeochemical role of the SAR11 clade remains uncertain, these data support the conclusion that this microbial group is among the most successful organisms on Earth.     

Evidence for deep-water production in the North Pacific Ocean during the early Cenozoic warm interval

The deep-ocean circulation is responsible for a significant component of global heat transport. In the present mode of circulation, deep waters form in the North Atlantic and Southern oceans where surface water becomes sufficiently cold and dense to sink. Polar temperatures during the warmest climatic interval of the Cenozoic era (approximately 65 to 40 million years (Myr) ago) were significantly warmer than today, and this may have been a consequence of enhanced oceanic heat transport. However, understanding the relationship between deep-ocean circulation and ancient climate is complicated by differences in oceanic gateways, which affect where deep waters form and how they circulate. Here I report records of neodymium isotopes from two cores in the Pacific Ocean that indicate a shift in deep-water production from the Southern Ocean to the North Pacific approximately 65 Myr ago. The source of deep waters reverted back to the Southern Ocean 40 Myr ago. The relative timing of changes in the neodymium and oxygen isotope records indicates that changes in Cenozoic deep-water circulation patterns were the consequence, not the cause, of extreme Cenozoic warmth.     

Deep convection in the Irminger Sea forced by the Greenland tip jet

Open-ocean deep convection, one of the processes by which deep waters of the world's oceans are formed, is restricted to a small number of locations (for example, the Mediterranean and Labrador seas). Recently, the southwest Irminger Sea has been suggested as an additional location for open-ocean deep convection. The deep water formed in the Irminger Sea has the characteristic temperature and salinity of the water mass that fills the mid-depth North Atlantic Ocean, which had been believed to be formed entirely in the Labrador basin. Here we show that the most likely cause of the convection in the Irminger Sea is a low-level atmospheric jet known as the Greenland tip jet, which forms periodically in the lee of Cape Farewell, Greenland, and is associated with elevated heat flux and strong wind stress curl. Using a history of tip-jet events derived from meteorological land station data and a regional oceanic numerical model, we demonstrate that deep convection can occur in this region when the North Atlantic Oscillation Index is high, which is consistent with observations. This mechanism of convection in the Irminger Sea differs significantly from those known to operate in the Labrador and Mediterranean seas.     

Only male fin whales sing loud songs

The low-frequency vocalizations of fin and blue whales are the most powerful and ubiquitous biological sounds in the ocean. Here we combine acoustic localization and molecular techniques to show that, in fin whales, only males produce these vocalizations. This finding indicates that they may function as male breeding displays, and will help to focus concern on the impact of human-generated low-frequency sounds on recovering whale populations.     

Molecular biological analysis of remains from Jiangjungou Cemetery in Inner Mongolia

The 364-bp nucleotide sequence in hypervariable region I (HVRI) of mitochondrial DNA is successfully amplified from 9 out of 11 individuals of an ancient population buried in the Jiangjungou Cemetery in Inner Mongolia dated back to the Warring States Period in China. Nine fragments with different variations are obtained. A phylogenetic tree and a multidimensional scaling (MDS) plot are constructed using mtDNA sequences from the ancient population and several modern Asian populations. The results show that ancient population shares a closer genetic relationship with East Asian populations than with North and Central Asian populations. The genetic and historical evidence raise the possibility that the population might be the immigrants from Zhongyuan area, sent by the King Wuling of Zhao State to guard the nation against the attack from Huns.     

Pumping of nutrients to ocean surface waters by the action of propagating planetary waves

Primary productivity in the oceans is limited by the lack of nutrients in surface waters. These nutrients are mostly supplied from nutrient-rich subsurface waters through upwelling and vertical mixing, but in the ocean gyres these mechanisms do not fully account for the observed productivity. Recently, the upward pumping of nutrients, through the action of eddies, has been shown to account for the remainder of the primary productivity; however, these were regional studies which focused on mesoscale (100-km-scale) eddies. Here we analyse remotely sensed chlorophyll and sea-surface-height data collected over two years and show that 1,000-km-scale planetary waves, which propagate in a westward direction in the oceans, are associated with about 5 to 20% of the observed variability in chlorophyll concentration (after low-frequency and large-scale variations are removed from the data). Enhanced primary production is the likely explanation for this observation, and if that is the case, propagating disturbances introduce nutrients to surface waters on a global scale--similar to the nutrient pumping that occurs within distinct eddies.     

Vigorous exchange between the Indian and Atlantic oceans at the end of the past five glacial periods

The magnitude of heat and salt transfer between the Indian and Atlantic oceans through 'Agulhas leakage' is considered important for balancing the global thermohaline circulation. Increases or reductions of this leakage lead to strengthening or weakening of the Atlantic meridional overturning and associated variation of North Atlantic Deep Water formation. Here we show that modern Agulhas waters, which migrate into the south Atlantic Ocean in the form of an Agulhas ring, contain a characteristic assemblage of planktic foraminifera. We use this assemblage as a modern analogue to investigate the Agulhas leakage history over the past 550,000 years from a sediment record in the Cape basin. Our reconstruction indicates that Indian-Atlantic water exchange was highly variable: enhanced during present and past interglacials and largely reduced during glacial intervals. Coherent variability of Agulhas leakage with northern summer insolation suggests a teleconnection to the monsoon system. The onset of increased Agulhas leakage during late glacial conditions took place when glacial ice volume was maximal, suggesting a crucial role for Agulhas leakage in glacial terminations, timing of interhemispheric climate change and the resulting resumption of the Atlantic meridional overturning circulation.     

Sensitivity of coccolithophores to carbonate chemistry and ocean acidification

About one-third of the carbon dioxide (CO(2)) released into the atmosphere as a result of human activity has been absorbed by the oceans, where it partitions into the constituent ions of carbonic acid. This leads to ocean acidification, one of the major threats to marine ecosystems and particularly to calcifying organisms such as corals, foraminifera and coccolithophores. Coccolithophores are abundant phytoplankton that are responsible for a large part of modern oceanic carbonate production. Culture experiments investigating the physiological response of coccolithophore calcification to increased CO(2) have yielded contradictory results between and even within species. Here we quantified the calcite mass of dominant coccolithophores in the present ocean and over the past forty thousand years, and found a marked pattern of decreasing calcification with increasing partial pressure of CO(2) and concomitant decreasing concentrations of CO(3)(2-). Our analyses revealed that differentially calcified species and morphotypes are distributed in the ocean according to carbonate chemistry. A substantial impact on the marine carbon cycle might be expected upon extrapolation of this correlation to predicted ocean acidification in the future. However, our discovery of a heavily calcified Emiliania huxleyi morphotype in modern waters with low pH highlights the complexity of assemblage-level responses to environmental forcing factors.     

Riverine export of aged terrestrial organic matter to the North Atlantic Ocean

Global riverine discharge of organic matter represents a substantial source of terrestrial dissolved and particulate organic carbon to the oceans. This input from rivers is, by itself, more than large enough to account for the apparent steady-state replacement times of 4,00-6,000 yr for oceanic dissolved organic carbon. But paradoxically, terrestrial organic matter, derived from land plants, is not detected in seawater and sediments in quantities that correspond to its inputs. Here we present natural 14C and 13C data from four rivers that discharge to the western North Atlantic Ocean and find that these rivers are sources of old (14C-depleted) and young (14C-enriched) terrestrial dissolved organic carbon, and of predominantly old terrestrial particulate organic carbon. These findings contrast with limited earlier data that suggested terrestrial organic matter transported by rivers might be generally enriched in 14C from nuclear testing, and hence newly produced. We also find that much of the young dissolved organic carbon can be selectively degraded over the residence times of river and coastal waters, leaving an even older and more refractory component for oceanic export. Thus, pre-ageing and degradation may alter significantly the structure, distributions and quantities of terrestrial organic matter before its delivery to the oceans.     

Viruses in the sea

Viruses exist wherever life is found. They are a major cause of mortality, a driver of global geochemical cycles and a reservoir of the greatest genetic diversity on Earth. In the oceans, viruses probably infect all living things, from bacteria to whales. They affect the form of available nutrients and the termination of algal blooms. Viruses can move between marine and terrestrial reservoirs, raising the spectre of emerging pathogens. Our understanding of the effect of viruses on global systems and processes continues to unfold, overthrowing the idea that viruses and virus-mediated processes are sidebars to global processes.     

Episodic fresh surface waters in the Eocene Arctic Ocean

It has been suggested, on the basis of modern hydrology and fully coupled palaeoclimate simulations, that the warm greenhouse conditions that characterized the early Palaeogene period (55-45 Myr ago) probably induced an intensified hydrological cycle with precipitation exceeding evaporation at high latitudes. Little field evidence, however, has been available to constrain oceanic conditions in the Arctic during this period. Here we analyse Palaeogene sediments obtained during the Arctic Coring Expedition, showing that large quantities of the free-floating fern Azolla grew and reproduced in the Arctic Ocean by the onset of the middle Eocene epoch (approximately 50 Myr ago). The Azolla and accompanying abundant freshwater organic and siliceous microfossils indicate an episodic freshening of Arctic surface waters during an approximately 800,000-year interval. The abundant remains of Azolla that characterize basal middle Eocene marine deposits of all Nordic seas probably represent transported assemblages resulting from freshwater spills from the Arctic Ocean that reached as far south as the North Sea. The termination of the Azolla phase in the Arctic coincides with a local sea surface temperature rise from approximately 10 degrees C to 13 degrees C, pointing to simultaneous increases in salt and heat supply owing to the influx of waters from adjacent oceans. We suggest that onset and termination of the Azolla phase depended on the degree of oceanic exchange between Arctic Ocean and adjacent seas.     

Spatial coupling of nitrogen inputs and losses in the ocean

Nitrogen fixation is crucial for maintaining biological productivity in the oceans, because it replaces the biologically available nitrogen that is lost through denitrification. But, owing to its temporal and spatial variability, the global distribution of marine nitrogen fixation is difficult to determine from direct shipboard measurements. This uncertainty limits our understanding of the factors that influence nitrogen fixation, which may include iron, nitrogen-to-phosphorus ratios, and physical conditions such as temperature. Here we determine nitrogen fixation rates in the world's oceans through their impact on nitrate and phosphate concentrations in surface waters, using an ocean circulation model. Our results indicate that nitrogen fixation rates are highest in the Pacific Ocean, where water column denitrification rates are high but the rate of atmospheric iron deposition is low. We conclude that oceanic nitrogen fixation is closely tied to the generation of nitrogen-deficient waters in denitrification zones, supporting the view that nitrogen fixation stabilizes the oceanic inventory of fixed nitrogen over time.     

Selective habituation shapes acoustic predator recognition in harbour seals

Predation is a major force in shaping the behaviour of animals, so that precise identification of predators will confer substantial selective advantages on animals that serve as food to others. Because experience with a predator can be lethal, early researchers studying birds suggested that predator recognition does not require learning. However, a predator image that can be modified by learning and experience will be advantageous in situations where cues associated with the predator are highly variable or change over time. In this study, we investigated the response of harbour seals (Phoca vitulina) to the underwater calls of different populations of killer whales (Orcinus orca). We found that the seals responded strongly to the calls of mammal-eating killer whales and unfamiliar fish-eating killer whales but not to the familiar calls of the local fish-eating population. This demonstrates that wild harbour seals are capable of complex acoustic discrimination and that they modify their predator image by selectively habituating to the calls of harmless killer whales. Fear in these animals is therefore focused on local threats by learning and experience.     

Reduced mixing from the breaking of internal waves in equatorial waters

In the oceans, heat, salt and nutrients are redistributed much more easily within water masses of uniform density than across surfaces separating waters of different densities. But the magnitude and distribution of mixing across density surfaces are also important for the Earth's climate as well as the concentrations of organisms. Most of this mixing occurs where internal waves break, overturning the density stratification of the ocean and creating patches of turbulence. Predictions of the rate at which internal waves dissipate were confirmed earlier at mid-latitudes. Here we present observations of temperature and velocity fluctuations in the Pacific and Atlantic oceans between 42 degrees N and 2 degrees S to extend that result to equatorial regions. We find a strong latitude dependence of dissipation in accordance with the predictions. In our observations, dissipation rates and accompanying mixing across density surfaces near the Equator are less than 10% of those at mid-latitudes for a similar background of internal waves. Reduced mixing close to the Equator will have to be taken into account in numerical simulations of ocean dynamics--for example, in climate change experiments.