文昌鱼Rbx1同源基因的克隆，进化分析和表达图式的研究

在青岛文昌鱼中首次克隆到一个RING box同源基因，对其进行了序列特征和系统进化学分析，并且研究了该基因的胚胎发育和成体表达图式。AmphiRbx1演绎的蛋白序列与已知其他无脊椎动物和脊椎动物的同源分子表现出很高的相似性。利用原位杂交和RT-PCR技术研究该基因的表达，结果显示AmphiRbx1在胚胎发育各期均有表达，特别是在卵裂期胚胎和有高速分裂细胞的组织中有很强的表达。实验结果表明，Rbx1基因在进化中相当保守，AmphiRbx1可能在细胞分裂的调节中发挥作用。     

Cloning of a down-regulated gene encoding small GTP binding protein in hybrid wheat

Previous studies showed that differential gene expression between wheathybrids and their parents was responsible for the heterosis. To provide an insight into the molecular basis of wheat heterosis, one cDNA, designated TaRab, was identified from the cDNA library of wheat seedling leaves. The sequence comparison in GenBank revealed that TaRab is homologous to a group of genes encoding Rab-GTP binding protein. Semi-quantitative RT-PCR analysis indicated that TaRab was expressed in all plant tissues examined, but at slightly higher level in leaves. Further analysis exhibited that TaRab displayed lower expression in hybrid than in its patents in both roots and leaves, which was in agreement with the original results of suppression subtractive hybridization. TaRab was located on chromosome 7B and C-7DS5-0.36 by in silico mapping. The relationship between differential expression of TaRab and the molecular basis of wheat heterosis was also discussed.     

文昌鱼Rbx1同源基因的克隆，进化分析和表达图式的研究（英文）

在青岛文昌鱼中首次克隆到一个RING box同源基因,对其进行了序列特征和系统进化学分析,并且研究了该基因的胚胎发育和成体表达图式 。AmphiRbx1演绎的蛋白序列与已知其他无脊椎动物和脊椎动物的同源分子表现出很高的相似性。利用原位杂交和RT PCR技术研究该基因的表达,结果显示AmphiRbx1在胚胎发育各期均有表达,特别是在 卵裂期胚胎和有高速分裂细胞的组织中有很强的表达。实验结果表明,Rbx1基因在进化中相当保守,AmphiRbx1可能在细胞分裂的调节中发挥作用。
     

带有TAT-PTD跨膜转导域融合基因的原核表达及表达条件优化

为构建pGEX-TAT-GFP原核表达质粒并优化GST-TAT-GFP表达条件,将PCR扩增的基因TAT-GFP克隆至质粒pGEX-2T,转化大肠杆菌BL21,IPTG诱导表达并优化表达条件,表达产物进行SDS-PAGE、Western blot及荧光学特性鉴定.结果表明:构建的质粒经PCR、酶切和DNA测序正确,含有重组质粒的宿主菌经过IPTG诱导表达分子量约为54.3 kD的融合蛋白GST-TAT-GFP,并经优化确定最佳的诱导表达条件.     

一种改进的谱聚类算法及其在基因表达谱分析中的应用

聚类分析是从基因表达谱数据中提取生物医学信息的主要方法之一.针对传统谱聚类算法无法确定聚类个数的问题,提出一种改进的谱聚类算法并将其应用于基因表达谱聚类分析.首先用基因表达谱数据构造Laplacian矩阵,经特征值分解后得到相应的特征值和特征向量,用谱隙来描述相邻特征值的差值;然后通过寻找谱隙序列的最大值来确定聚类个数;最后从单位化的特征向量着手实现数据类别的划分.通过模拟数据与癌症数据的实验,证明了该文算法的有效性.     

AK078438基因原核表达载体构建、多克隆抗体制备

AK078438基因是一个功能未知的新基因.通过RT-PCR方法扩增出AK078438基因的全长开放阅读框,构建了AK078438基因的原核表达载体.经诱导表达,亲和层析纯化该基因的融合蛋白并制备多克隆抗体.ELISA和Western blot结果表明我们成功的制备了AK078438基因的抗体,为后续该基因功能的研究做好了准备.     

一个水稻蛋白激酶的过表达分析及表达调控

对一个预测的具有光反应活性的丝氨酸/苏氨酸蛋白激酶STK进行过表达研究,构建了STK过表达载体,并用农杆菌介导的方法进行遗传转化,获得T0代转基因植株.对转基因阳性植株进行表达分析的结果表明,转基因植株STK基因的表达量显著高于对照,说明目的基因得到了过表达.另外,利用获得的过表达转基因植株对STK调控水稻中光周期相关的开花基因Hd1和Hd3a的表达进行分析,结果表明,Hd1及Hd3a的表达在转基因植株中明显上调,表明该蛋白激酶的基因可能位于Hd1和Hd3a上游,对于Hd1和Hd3a的表达具有重要的调控作用.     

Biochemical characterization of the protein encoded by rice osRACD gene

A recombinant plasmid pET-racd was first constructed by cloning osRACD,the development-regulating gene that controls photoperiod fertility transformation in the photoperiod sensitive genic male sterile rice Nongken 58S,into a prokaryote expression vector pET28a(+).It was then transformed into E.Coli BL-21.Cutting with thrombin of the fusion protein extracted from transformants and PAGE separation yielded pure osRACD protein,which was further concentrated using ultrafiltration and renatured using glutathione oxidation/reduction refolding system for later functional study.As demonstrated by in vitro functional assay,the osRACD protein expressed in E.Coli B-21 shows remarkable activity in binding GTP specifically and hydrolyzing it.     

应用表达谱基因芯片筛选植物激活蛋白处理水稻相关差异基因

应用基因表达谱检测植物激活蛋白处理水稻相关差异基因的表达,建立相关基因表达谱。用Cy5和Cy3分别标记激活蛋白处理和对照cDNA,将两种荧光探针混合,与载有10368位点的水稻表达谱cDNA基因芯片进行杂交,并用芯片扫描系统进行扫描,通过Cy5与Cy3信号强度比值的计算研究基因的表达差异。共获得97个差异表达基因,其中上调基因4个,下调基因93个。应用基因表达谱芯片成功筛选了植物激活蛋白处理水稻差异表达的基因,为深入揭示该激活蛋白的作用机制研究提供依据。     

AtGT-3b基因克隆及原核表达与纯化

GT-3b转录因子是一个受NaCl和病原体诱导表达的GT-1-like转录因子,它能与GT-1 cis-element( GAAAAA)相互作用,促进下游基因的表达,在植物耐盐中起着重要的调节作用.通过分离了拟南芥(Arabidopsis thaliana)AtGT-3b基因,克隆到原核表达载体pCold TF中,并在大肠杆菌(Escherichia coli)BL21中进行融合表达;通过纯化得到AtGT-3b融合蛋白,以期用于研究其与GT-1顺式作用元件在体外的相互作用.     

Effects of antisense CENP-Bon the proliferation of HeLa (Tet-off) cells

In order to study the change of the expression of centromere protein B (CENP-B) caused by anfisense tcansfection, proto-eukaryotically expressed fused protein GST-CENP-B (65 ku) was injected into mouse, and a peculiar anti-CENP-B serum MaCenpB was collected. A strain of transfected HeLa Tet-off cell HaCb, which contains antisense CENP-B expressing vector pBI-EGFP-as-CenpB, was prepared. Northern blot and Western blot were used to analyze the repression of internal CENP-B in transfected cells. According to the growth curve, the proliferation of HeLa (Tet-off) is repressed by antisense CENP-B, and the multiplication time is prolonged for 32.81 h. The analysis of flow cytometry revealed that, compared with HeLa (Tet-off), the G1 cell population of HaCb is increased (△G1 = 9%) while S fraction is decreased (△S = 11%), but the G2/M phase is nearly unchanged (△G2/M=3%). In the meanwhile, the mitotic index of HaCb declines greatly compared with that of HeLa (Tet-off). Immunofluorescence showed that the assembling of centromeres in HaCb cell is arrested. These results suggest that a normal expression of CENP-B may be necessary for cell proliferation.     

nm23-H1基因与人早幼粒白血病细胞HL-60增殖的相关性分析

目的探讨nm23-H1基因的表达与白血病细胞HL-60增殖之间的关系。方法：以25ng／mL阿糖胞苷处理HL-60细胞,MTT法测定细胞生长抑制率,NBT还原比色法判断细胞分化状况,RT-PCR检测nm23-H1基因表达的变化;构建nm23-H1基因的真核表达质粒pEGFP-N1-nm23-H1,转染HL-60细胞,通过细胞生长曲线和血清依赖性实验检测nm23-H1基因的过表达对HL-60细胞生长的影响。结果：小剂量Ara-C对HL-60细胞的生长呈时间依赖性抑制,作用4d后细胞NBT还原能力增强且nm23-H1基因的表达下调;转染nm23-H1基因的HL-60细胞生长加快、血清依赖性下降。结论：Ara-C对HL-60细胞增殖的抑制作用与下调nm23-H1基因的表达有-定关系;nm23-H1基因在HL-60细胞中的过表达有促细胞增殖的作用,即增高了HL-60细胞的恶性程度。     

High expression of EPO gene using un-dhfr negative cell

Erythropoietin (EPO) genomic gene was cloned and its expression vector pOP13/EPO was constructed. CHO_K12 cell was transfected by this vector using lipofectin method. A stable expression cell strain C10 cell with the EPO production at 160IU/d in 10\+6 cells were obtained at 400 μg/mL G418. Based on the C10 cell, another vector pHY/dhfr (dihydrofolate reductase) that carries a dhfr gene and a selecting marker of hygromycin B resistant gene was transferred to this cell. Several cell clones were obtained at 200 μg/mL hygromycin B. These cell clones that can express both EPO gene and exogenous dhfr gene were selected under the progressively increased concentration to 1 μmol methotrexate(MTX). Some high EPO expression cell clones were obtained, the highest expression was 2 400 IU/d in 10\+6 cells, 15 times higher than that without MTX pressure. Then, a method of EPO high expression by using un_dhfr negative cell was primarily established. EPO bioactivity was found by using TF_1 cell.     

Effects of antisense CENP-B on the proliferation of HeLa (Tet-off) cells

In order to study the change of the expression of centromere protein B (CENP-B) caused by antisense transfection, proto-eukaryotically expressed fused protein GST-CENP-B (65 ku) was injected into mouse, and a peculiar anti-CENP-B serum MaCenpB was collected. A strain of transfected HeLa Tet-off cell HaCb, which contains antisense CENP-B expressing vector pBI-EGFP-as-CenpB, was prepared. Northern blot and Western blot were used to analyze the repression of internal CENP-B in transfected cells. According to the growth curve, the proliferation of HeLa (Tet-off) is repressed by antisense CENP-B, and the multiplication time is prolonged for 32.81 h. The analysis of flow cytometry revealed that, compared with HeLa (Tet-off), the G₁ cell population of HaCb is increased (ΔG₁= 9%) while S fraction is decreased (ΔS = 11%), but the G₂/M phase is nearly unchanged (ΔG₂/M=3%). In the meanwhile, the mitotic index of HaCb declines greatly compared with that of HeLa (Tet-off). Immunofluorescence showed that the assembling of centromeres in HaCb cell is arrested. These results suggest that a normal expression of CENP-B may be necessary for cell proliferation.     

人血管生成素基因的克隆及表达

利用RI-PCR方法从培养的人黑色素瘤细胞系A375中扩增得到了人血管生成素cDNA片段,测序正确后克隆入表达载体pET-28a( )中并转化于E.coli BL21宿主菌中.经IPTG诱导,表达了N端融合6个组氨酸标签(6His-tag)的血管生成素融合蛋白.利用6His-tag与过渡态金属离子Ni2 高亲和力结合的性质,经镍柱纯化,获得了高纯度的血管生成素融合蛋白,为进一步研究其生物活性及应用奠定了基础.     

Monitoring gene expression by cDNA array

A new method designated cDNA array was developed by hybridization of quantitatively arrayed DNA samples isolated randomly from a cDNA library with probes reverse-transcribed from mRNAs of different sources or treatments. The gene expression patterns of 1 000 randomly chosen clones from an Arabidopsis library were analyzed with green seedlings versus suspension cells and seedlings irradiated under UV light. Northern blot and sequence analysis of some differentially expressed clones confirmed the results revealed by cDNA array, indicating that this method is efficient and reliable to monitor gene expression.     

一种改进的基因表达数据双聚类算法

对基因表达数据进行双聚类分析是生物信息学领域的一种重要技术方法,但双聚类问题已被证明属于NP难问题.目前针对基因表达数据的双聚类算法都存在时间效率较低的问题.为此,采用遗传算法与粒子群优化算法相结合的混合进化算法来求解基因表达数据的双聚类问题.实验结果表明,所提算法在明显减少运行时间的同时,仍能保证良好的聚类效果.     

实时定量PCR检测B细胞恶性肿瘤中BCL11A基因的表达水平

目的:建立B细胞淋巴瘤/白血病BCL11A基因的定量检测方法,并分析其在B细胞恶性肿瘤中的表达水平。方法:利用实时定量RT-PCR分析B细胞淋巴瘤(18例)、B细胞性慢性淋巴细胞白血病(B-CLL,8例)、T细胞性急性淋巴细胞白血病(T-ALL,8例)和正常对照(15例)外周血单个核细胞(PBMC)中BCL11A基因的表达水平,以甘油醛-3-磷酸脱氢酶(GAPDH)基因作为内对照。结果:B-CLL组和B细胞淋巴瘤组患者PBMC中BCL11A表达水平均明显高于正常对照(P=0.000)和T-ALL组(P=0.000);T-ALL组和正常对照组BCL11A表达水平无显著差别(P=0.084);B-CLL组和B细胞淋巴瘤组BCL11A表达水平无显著差别(P=0.776)。在B细胞淋巴瘤不同的病例中,BCL11A表达水平有较大差异,其中最小值为0.04,最大值为9.70,中位值为1.00。结论:成功建立BCL11A基因的定量检测方法。     

杉木ClWRKY44基因克隆及其表达特性分析

【目的】以杉木幼叶为试验材料,通过克隆杉木ClWRKY44基因,分析其表达特性,为揭示杉木抗逆生理的分子机制提供理论依据。【方法】采用RT-PCR技术克隆杉木ClWRKY44 基因,对其进行生物信息学分析和亚细胞定位研究,并利用实时荧光定量PCR技术分析其表达情况。【结果】杉木ClWRKY44 基因的开放阅读框(ORF)为1 776 bp,编码591个氨基酸,具有WRKY结构域。系统进化树分析结果显示ClWRKY44 基因与拟南芥(Arabidopsis thaliana)ATWRKY44 的亲缘关系较密切,其在杉木的不同器官(叶、根、茎) 中均有表达,嫩叶中的表达量最高,茎中次之,根中最低。低温胁迫处理6 h,ClWRKY44 基因相对表达量最高,约是对照组的79.8倍。干旱胁迫处理24 h,ClWRKY44 基因在高浓度干旱胁迫处理下的相对表达量最高,约是对照组的46.6倍。【结论】杉木ClWRKY44基因编码的蛋白质序列与拟南芥ATWRKY44的同源性很高,在调控植物逆境胁迫应答过程中可以发挥功能,为杉木幼苗生长发育的适应性提供参考。