蛋白质三维结构预测问题的求解方法

对蛋白质结构预测问题进行了描述,根据蛋白质结构预测问题在三维欧氏空间的连续模型,通过拟物策略找到了相应的数学模型.由于引入了弹性势能和嵌入势能,将一个有约束的问题转化为一个无约束的问题,并在梯度下降法求解的基础上,设计出一种变步长梯度下降的求解方法.通过实例检测,变步长梯度下降法比梯度下降法大大节省了计算时间,且所得结果的能量比梯度下降法所得结果的能量更低.     

矩阵的弱相似性及其应用

推广了矩阵环Mn(F)中相似性概念，提出了矩阵的弱相似概念，研究了它的基本性质，获得一些有趣结果，此外，指出了文[3]的一个错误，给出了Laffey-Choi一个关键引理的矩阵式的证明。     

相似理论内容的扩充与分析

将相似定理的数量由原来的3个扩充至11个,并提出了相似准数、相似指数方程、基础物理量以及函数物理量等概念,从而增强了相似理论的系统性.     

An optimization approach to the similarity criteria of flows and its application

In the present paper, we propose an optimization approach to investigate the similarity criteria of complex flows. With this approach, we may identify the dominant dimensionless variables governing complex flows by numerical sensitivity analysis. Firstly, we define the sensitivity factor and examine its dependence on the dimensionless variables. Then, we apply this approach to study the similarity criteria of porous media flow in a presumed oil reservoir. The similarity principle obtained from the numerical sensitivity analysis is in agreement with the theoretical law, thus demonstrating the feasibility of the proposed optimization approach. Further explanation is given by analyzing the deviation of pressure distribution in a model from its prototype. In addition, we examine the effects of flow parameter variation on the sensitivity factors and find that the dominant dimensionless variables may change from different sets of parameters.     

相似索引等距包络参数计算的改进算法

在相似索引等距包络（球包络）的参数计算中，直接计算方法由于计算代价过高而难于应用。 Ｒ． Ｋｕｎｉａｗ ａｔｉ和 Ｊ． Ｓ． Ｊｉｎ 针对欧氏空间情形提出一种迭代的 γ空间搜索算法，但其计算过程需要保存前面计算得到的所有平面参数，在实际应用中受到一定限制。为了解决这个问题，该文对γ空间搜索算法进行了改进，避免了原算法的缺点，并将改进算法进一步推广到二次型距离空间和街区距离空间中。文中给出了算法的基本思想，以及必要的定理证明。此算法在大容量图像库基于内容检索系统中应用带来的性能改进说明了算法的有效性     

The Caenorhabditis elegans lin-12 gene encodes a transmembrane protein with overall similarity to Drosophila Notch

The lin-12 gene seems to control certain binary decisions during Caenorhabditis elegans development, from genetic and anatomical studies of lin-12 mutants that have either elevated or reduced levels of lin-12 activity. We report here the complete DNA sequence of lin-12: 13.5 kilobases (kb) derived from genomic clones and 4.5 kb from complementary DNA clones. It is of interest that the predicted product is a putative transmembrane protein, given that many of the decisions controlled by lin-12 activity require cell-cell interactions for the correct choice of cell fate. In addition, the predicted lin-12 product may be classified into several regions, based on amino acid sequence similarities to other proteins. These include extensive overall sequence similarity to the Drosophila Notch protein, which also is involved in cell-cell interactions that specify cell fate; a repeated motif found in proteins encoded by the yeast cell-cycle control genes cdc10 (Schizosaccharomyces pombe) and SWI6 (Saccharomyces cerevisiae); and a repeated motif exemplified by epidermal growth factor, found in many mammalian proteins.     

ADC的结构及其应用

介绍了目前流行的ADC的4种结构及其性能特点。并从其电路实现的复杂程度、采样速度和应用领域等方面进行了对比研究．     

蛋白质拓扑结构Alignment与相似性打分的算法

蛋白质结构分类是当今“后基因组”研究的热点 ,是探索蛋白质折叠 /功能关系的有效方法 .创立一种新型的分类体系就意味着对复杂的蛋白质结构的有了进一步的理解 .本文基于蛋白质结构域的拓扑结构 ,将拓扑量化 ,以Alignment矩阵方法对结构域进行比较 ,并按拓扑结构相似性对任意 2个蛋白质进行打分 .上述算法已经实现了程序化 .依此算法可将一组蛋白质进行新的分类 ,并可望将结构分类与生物功能的关系进行分析 .     

The structure of phospholamban and its MD simulations

Phospholamban is an important protein with responsibility for regulating the activity of the sarcoplasmic reticulum Ca2+ pump through reversible phosphorylation.And its three-dimensional structure in living cell has been a focus of attention.In the current case, we summarized the investigations on phospholamban structure, and on this base, employed long time-scale molecular dy-namics simulations to study its structure systematically.The first 22 residues from one chain of phospholamban in bellflower structu...     

大豆蛋白质纤维(华康)聚集态结构

对大豆蛋白质纤维(华康），聚集态结构进行了研究，认为聚乙烯大分子呈平面锯齿形构象，而大豆蛋白大分子在纺丝前的处理过程中已经变性，由α-螺旋转变为直线形的β-链构象，并共同砌入纤维；由于两组分大分子均带有较多的极性基团。在大分子之间可能形成多种键合，同时大豆蛋白质纤维（华康）成纤后，进行的缩醛化处理在两组分大分子之间形成了化学交联。因此。可以认为大豆蛋白质纤维（华康）的聚集态结构是以直链形大分子网状结构为主体的聚集态结构。X-射线衍射图表明，大豆蛋白质纤维（华康）大分子的结晶能力较弱。二维空间排列有序的向列结晶能力较强。     

The structure of the protein universe and genome evolution

Despite the practically unlimited number of possible protein sequences, the number of basic shapes in which proteins fold seems not only to be finite, but also to be relatively small, with probably no more than 10,000 folds in existence. Moreover, the distribution of proteins among these folds is highly non-homogeneous -- some folds and superfamilies are extremely abundant, but most are rare. Protein folds and families encoded in diverse genomes show similar size distributions with notable mathematical properties, which also extend to the number of connections between domains in multidomain proteins. All these distributions follow asymptotic power laws, such as have been identified in a wide variety of biological and physical systems, and which are typically associated with scale-free networks. These findings suggest that genome evolution is driven by extremely general mechanisms based on the preferential attachment principle.     

线粒体蛋白转运系统的序列相似性分析

通过在27个不同进化层次物种的基因组和蛋白组中搜索酵母线粒体蛋白转运系统亚基的同源序列, 并进一步分析了同源亚基序列相似性与其所在线粒体位置的关系. 结果表明, 位于线粒体相同位置的模块有类似的序列相似性曲线, 相似性曲线在模块内部一般有波峰和波谷. 从线粒体外膜到基质, 序列相似性整体升高. 线粒体蛋白转运系统亚基与一些功能不相关的蛋白也表现出序列相似关系, 且这些亚基多集中在线粒体的内膜和外膜.     

多标度数据轮廓相似性的度量公理与计算

为了完善轮廓相似性度量的概念和计算,拓展轮廓相似度计算公式的应用,讨论了样本几何轮廓的序结构和表示定理,修正了轮廓相似性的度量公理与计算公式.在样本几何轮廓和"轮廓优"序的定义下,证明了"轮廓优"序的"严格弱序"结构,证明了在轮廓相似性分析问题中表示定理成立,奠定了约定"轮廓相似性度量公理"的逻辑基础,进而定义了样本几何轮廓的"相似度"序,证明了"相似度"序的"严格偏序"结构,并修正了轮廓相似度计算公式.使轮廓相似分析的概念与相似度计算公式能适应不同背景下的多标度数据分析的要求.     

PAN纤维径向结构及其表征方法的研究

以湿法纺丝制备的聚丙烯腈（PAN）纤维为研究对象,将纤维在二甲基亚砜（DMSO）水溶液中进行溶解,通过其溶解特征探讨了纤维的溶解机理,进而对纤维的径向结构进行分析表征,并结合红外测试分析了其径向结构对预氧化进程的影响。结果表明：PAN纤维的溶解机理为自内向外进行;通过纤维的溶解特征可分析出纤维径向结构,且与红外测试所得结论相同;凝固浴温度在45℃时与25℃相比,所得纤维径向上皮层及芯层更致密,过渡区域更疏松;预氧化进程初期,氧气更易在致密程度更低更疏松的纤维径向上发生扩散。     

信息向量的粗相似度与知识挖掘

利用粗信息矩阵与相似度的概念,提出信息向量的粗相似度矩阵的概念,完整地讨论了粗相似度、粗相似度矩阵的性质,给出了粗相似度矩阵的生成特性及重要的定理。     

Close similarity of epidermal growth factor receptor and v-erb-B oncogene protein sequences

Each of six peptides derived from the human epidermal growth factor (EGF) receptor very closely matches a part of the deduced sequence of the v-erb-B transforming protein of avian erythroblastosis virus (AEV). In all, the peptides contain 83 amino acid residues, 74 of which are shared with v-erb-B. The AEV progenitor may have acquired the cellular gene sequences of a truncated EGF receptor (or closely related protein) lacking the external EGF-binding domain but retaining the transmembrane domain and a domain involved in stimulating cell proliferation. Transformation of cells by AEV may result, in part, from the inappropriate acquisition of a truncated EGF receptor from the c-erb-B gene.