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基因调控网络的父节点筛选贝叶斯建模方法
引用本文:曲璐渲,郭上慧,王之琼,信俊昌.基因调控网络的父节点筛选贝叶斯建模方法[J].东北大学学报(自然科学版),2020,41(2):158-162.
作者姓名:曲璐渲  郭上慧  王之琼  信俊昌
作者单位:(1. 东北大学 医学与生物信息工程学院, 辽宁 沈阳110169; 2. 沈阳东软智能医疗科技研究院有限公司, 辽宁 沈阳110179;3. 东北大学 计算机科学与工程学院, 辽宁 沈阳110169; 4. 辽宁省大数据管理与分析重点实验室, 辽宁 沈阳110169)
基金项目:国家自然科学基金资助项目(61472069,61402089); 中央高校基本科研业务费专项资金资助项目(N180101028,N180408019,N161602003,N160601001); 中国博士后科学基金资助项目(2018M641705,2019T120216); 沈阳东软智能医疗科技研究院有限公司开放课题基金资助项目(NRIHTOP1802).
摘    要:在构建基因调控网络的方法中,贝叶斯网络模型可以直观地表达基因间的调控关系,但在结构学习时的复杂度极高,使得网络建模效率较低且规模有限.因此,本文提出一种基于父节点筛选的贝叶斯网络(parent node screening based Bayesian network, PS-BN)建模方法.PS-BN方法将关联模型与贝叶斯网络模型相结合,在充分利用贝叶斯网络模型结构学习搜索策略的前提下,先基于父节点筛选方法去除部分冗余信息,以达到缩减搜索空间的目的.实验结果表明,与传统的贝叶斯网络模型方法相比,PS-BN方法极大提升了基因调控网络构建效率,同时准确率有所提高.

关 键 词:基因调控网络  父节点筛选  贝叶斯网络模型  关联模型  结构学习  
收稿时间:2019-04-17
修稿时间:2019-04-17

Modelling of Gene Regulatory Networks by Parent Node Screening-Based Bayesian Method
QU Lu-xuan,GUO Shang-hui,WANG Zhi-qiong,XIN Jun-chang.Modelling of Gene Regulatory Networks by Parent Node Screening-Based Bayesian Method[J].Journal of Northeastern University(Natural Science),2020,41(2):158-162.
Authors:QU Lu-xuan  GUO Shang-hui  WANG Zhi-qiong  XIN Jun-chang
Institution:1. School of Medicine & Biological Information Engineering, Northeastern University, Shenyang 110169, China; 2. Neusoft Research of Intelligent Healthcare Technology Co., Ltd., Shenyang 110179, China; 3. School of Computer Science & Engineering, Northeastern University, Shenyang 110169, China; 4. Key Laboratory of Big Data Management and Analytics
Abstract:Among the methods for modeling gene regulation networks, Bayesian network model can intuitively express the regulatory relationship between genes. However, due to the high complexity of Bayesian network model in the structure learning, the efficiency of the gene regulation networks modeling is low and the scale of the reconstructed network is limited. Therefore, this paper proposed a method which is called the parent node screening-based Bayesian network(PS-BN). The PS-BN method combines the correlation model with Bayesian network model. Under the premise of making full use of the search strategy of structure learning in Bayesian network model, the parent node screening method is used to remove some redundant nodes, thus reducing the search space. The experimental results show that compared with the Bayesian network model, the PS-BN method greatly improves the efficiency of modeling gene regulatory networks while improving the accuracy.
Keywords:gene regulatory networks  parent node screening  Bayesian network model  correlation model  structure learning  
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