Evaluation of the occurrence possibility of SNP in <Emphasis Type="Italic">Brassica napus</Emphasis> with sliding window features by using RBF networks |
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| Authors: | Xuehai Hu Ruiyuan Li Jinling Meng Huijuan Xiong Jingbo Xia Zhi Li |
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| Institution: | HU Xuehai1,LI Ruiyuan2,MENG Jinling2,XIONG Huijuan1,XIA Jingbo1,LI Zhi1 1. College of Science,Huazhong Agricultural University,Wuhan 430070,Hubei,China,2. National Key Laboratory of Crop Genetic Improvement |
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| Abstract: | We extract some physical and chemical features re-lated to the occurrence of single nucleotide polymorphism (SNP) from three groups of sliding windows around SNP site,and then make the predictions about accuracy by using radial basis function (RBF) networks. The result of the forward sliding windows sug-gests that the accuracies and Matthews correlation coefficient (MCC values) ascend with the increasing of length of sliding windows. The accuracies range from 73.27 % to 80.69 %,and MCC values range from 0.4... |
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| Keywords: | single nucleotide polymorphism (SNP) radial basis function (RBF) network Brassica napus sliding windows |
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