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The genome of the green anole lizard and a comparative analysis with birds and mammals
Authors:Alföldi Jessica  Di Palma Federica  Grabherr Manfred  Williams Christina  Kong Lesheng  Mauceli Evan  Russell Pamela  Lowe Craig B  Glor Richard E  Jaffe Jacob D  Ray David A  Boissinot Stephane  Shedlock Andrew M  Botka Christopher  Castoe Todd A  Colbourne John K  Fujita Matthew K  Moreno Ricardo Godinez  ten Hallers Boudewijn F  Haussler David  Heger Andreas  Heiman David  Janes Daniel E  Johnson Jeremy  de Jong Pieter J  Koriabine Maxim Y  Lara Marcia  Novick Peter A  Organ Chris L  Peach Sally E  Poe Steven  Pollock David D  de Queiroz Kevin  Sanger Thomas  Searle Steve  Smith Jeremy D  Smith Zachary  Swofford Ross
Institution:Broad Institute of MIT and Harvard, Cambridge, Massachusetts 02142, USA. jalfoldi@broadinstitute.org
Abstract:The evolution of the amniotic egg was one of the great evolutionary innovations in the history of life, freeing vertebrates from an obligatory connection to water and thus permitting the conquest of terrestrial environments. Among amniotes, genome sequences are available for mammals and birds, but not for non-avian reptiles. Here we report the genome sequence of the North American green anole lizard, Anolis carolinensis. We find that A. carolinensis microchromosomes are highly syntenic with chicken microchromosomes, yet do not exhibit the high GC and low repeat content that are characteristic of avian microchromosomes. Also, A. carolinensis mobile elements are very young and diverse-more so than in any other sequenced amniote genome. The GC content of this lizard genome is also unusual in its homogeneity, unlike the regionally variable GC content found in mammals and birds. We describe and assign sequence to the previously unknown A. carolinensis X chromosome. Comparative gene analysis shows that amniote egg proteins have evolved significantly more rapidly than other proteins. An anole phylogeny resolves basal branches to illuminate the history of their repeated adaptive radiations.
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