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DNA sequence and analysis of human chromosome 18
Authors:Nusbaum Chad  Zody Michael C  Borowsky Mark L  Kamal Michael  Kodira Chinnappa D  Taylor Todd D  Whittaker Charles A  Chang Jean L  Cuomo Christina A  Dewar Ken  FitzGerald Michael G  Yang Xiaoping  Abouelleil Amr  Allen Nicole R  Anderson Scott  Bloom Toby  Bugalter Boris  Butler Jonathan  Cook April  DeCaprio David  Engels Reinhard  Garber Manuel  Gnirke Andreas  Hafez Nabil  Hall Jennifer L  Norman Catherine Hosage  Itoh Takehiko  Jaffe David B  Kuroki Yoko  Lehoczky Jessica  Lui Annie  Macdonald Pendexter  Mauceli Evan  Mikkelsen Tarjei S  Naylor Jerome W  Nicol Robert  Nguyen Cindy  Noguchi Hideki  O'Leary Sinéad B
Institution:Broad Institute of MIT and Harvard, 320 Charles Street, Cambridge, Massachusetts 02141, USA. chad@broad.mit.edu
Abstract:Chromosome 18 appears to have the lowest gene density of any human chromosome and is one of only three chromosomes for which trisomic individuals survive to term. There are also a number of genetic disorders stemming from chromosome 18 trisomy and aneuploidy. Here we report the finished sequence and gene annotation of human chromosome 18, which will allow a better understanding of the normal and disease biology of this chromosome. Despite the low density of protein-coding genes on chromosome 18, we find that the proportion of non-protein-coding sequences evolutionarily conserved among mammals is close to the genome-wide average. Extending this analysis to the entire human genome, we find that the density of conserved non-protein-coding sequences is largely uncorrelated with gene density. This has important implications for the nature and roles of non-protein-coding sequence elements.
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