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基于多维伪F统计量的基因表达动态聚类分析方法研究
引用本文:骆嘉伟,李仁发,张白妮. 基于多维伪F统计量的基因表达动态聚类分析方法研究[J]. 系统仿真学报, 2006, 18(3): 586-589,601
作者姓名:骆嘉伟  李仁发  张白妮
作者单位:1. 湖南大学计算机与通信学院,长沙,410082
2. 华为技术有限公司,深圳,518129
基金项目:浙江省湖州市自然科学基金
摘    要:
K-均值聚类分析算法是一种广泛应用于基因表达数据聚类分析中的迭代变换算法,它通过指定类别数K-基于给定的聚类目标函数,并采用迭代更新的方法,使得最终的聚类结果的目标函数值为极小值,达到较优的聚类效果。针对K-均值聚类分析算法存在参数依赖性强,且在整个聚类过程中类的数目无法改变的缺点,引入动态调整聚类个数的思想和多维伪F统计量,提出了一种基于多维伪F统计量的基因表迭动态K-均值聚类算法。实验结果表明该算法可以动态调整聚类个数,给出最佳聚类数目,从而获得较好的聚类质量.

关 键 词:聚类分析  基因表达数据  伪F统计量  动态K-均值聚类
文章编号:1004-731X(2006)03-0586-04
收稿时间:2005-01-11
修稿时间:2005-01-112005-08-26

Study on Dynamic Clustering Analysis Method for Gene Expression Data Based on Multidimension Pseudo F-statistics
LUO Jia-wei,LI Ren-fa,ZHANG Bai-ni. Study on Dynamic Clustering Analysis Method for Gene Expression Data Based on Multidimension Pseudo F-statistics[J]. Journal of System Simulation, 2006, 18(3): 586-589,601
Authors:LUO Jia-wei  LI Ren-fa  ZHANG Bai-ni
Affiliation:1 .School of Computer and Communication, Hunan University, Changsha 410082, China 2.Huawei Technologies CO., LTD., Shenzhen 518129, China
Abstract:
K-means clustering analysis algorithm is a widely iterated algorithm in clustering analysis ofgene expression data. In this algorithm, cluster number is assumed to be K and iterated methods are employed to make the value of objective function minimum. By doing so, the cluster result improves very much. However K-means clustering analysis algorithm depends on parameters strongly and the cluster number keeps unchanged.. Fake F-statistic and an idea of adjusting cluster number were dynamically introduced, and then a new dynamic K-means clustering algorithm for Genes expressed data was proposed based on multi-dimension fake F-statistic. The experiment results show that the algorithm can adjust cluster number and gain a prime number of clustering, which thus argues that this algorithm can attain better clustering quality.
Keywords:clustering analysis   genes expressed data   fake F-statistics   dynamic K-means clustering
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