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Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii
Authors:Carlton Jane M  Angiuoli Samuel V  Suh Bernard B  Kooij Taco W  Pertea Mihaela  Silva Joana C  Ermolaeva Maria D  Allen Jonathan E  Selengut Jeremy D  Koo Hean L  Peterson Jeremy D  Pop Mihai  Kosack Daniel S  Shumway Martin F  Bidwell Shelby L  Shallom Shamira J  van Aken Susan E  Riedmuller Steven B  Feldblyum Tamara V  Cho Jennifer K  Quackenbush John  Sedegah Martha  Shoaibi Azadeh  Cummings Leda M  Florens Laurence  Yates John R  Raine J Dale  Sinden Robert E  Harris Michael A  Cunningham Deirdre A  Preiser Peter R  Bergman Lawrence W  Vaidya Akhil B  van Lin Leo H  Janse Chris J  Waters Andrew P  Smith Hamilton O
Affiliation:The Institute for Genomic Research, 9712 Medical Center Drive, Rockville, Maryland 20850, USA. carlton@tigr.org
Abstract:
Species of malaria parasite that infect rodents have long been used as models for malaria disease research. Here we report the whole-genome shotgun sequence of one species, Plasmodium yoelii yoelii, and comparative studies with the genome of the human malaria parasite Plasmodium falciparum clone 3D7. A synteny map of 2,212 P. y. yoelii contiguous DNA sequences (contigs) aligned to 14 P. falciparum chromosomes reveals marked conservation of gene synteny within the body of each chromosome. Of about 5,300 P. falciparum genes, more than 3,300 P. y. yoelii orthologues of predominantly metabolic function were identified. Over 800 copies of a variant antigen gene located in subtelomeric regions were found. This is the first genome sequence of a model eukaryotic parasite, and it provides insight into the use of such systems in the modelling of Plasmodium biology and disease.
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