Somatic histone H3 alterations in pediatric diffuse intrinsic pontine gliomas and non-brainstem glioblastomas

To identify somatic mutations in pediatric diffuse intrinsic pontine glioma (DIPG), we performed whole-genome sequencing of DNA from seven DIPGs and matched germline tissue and targeted sequencing of an additional 43 DIPGs and 36 non-brainstem pediatric glioblastomas (non-BS-PGs). We found that 78% of DIPGs and 22% of non-BS-PGs contained a mutation in H3F3A, encoding histone H3.3, or in the related HIST1H3B, encoding histone H3.1, that caused a p.Lys27Met amino acid substitution in each protein. An additional 14% of non-BS-PGs had somatic mutations in H3F3A causing a p.Gly34Arg alteration.     

Comment on “Low-frequency sea level variation and its correlation with climate events in the Pacific”

The tide gauge results exhibit strong multi-decadal oscillations with detected periodicities up to a quasi-60 years. This translates in the requirement of at least 60-70 years of continuously recorded data without any quality issue and the use of a procedure appropriate for time series with periodic components to infer the acceleration trend. This is not what is done in many recent papers where the oscillating behaviour is neglected and short or incomplete records arbitrarily extended or reconstructed are used to infer wrong accelerating trends. All the tide gauges of enough length and quality show the sea levels are oscillating with important multi-decadal periodicities but absolutely not positively accelerating. The satellite radar altimeter reconstruction of the global mean sea level only available since 1993 shows despite the many uncertainties of a still imperfect procedure a not positively accelerating behaviour. The presence of acceleration in the reconstructed or extended data sets and the lack of acceleration in all the individual tide gauge measurements of enough quality and length certainly deserve further discussion. This is a comment to a previously published original paper made on the basis of other previously published results and not a new original paper.     

Rabbit abundance relative to rainfall and plant production in northern Chihuahuan Desert grassland and shrubland habitats

Rabbit abundance patterns in the North American Southwest are poorly known, particularly relative to the potentially important influences of rainfall and plant production. We conducted a 10-year study on the comparative densities of black-tailed jackrabbits ( Lepus californicus ) and desert cottontail rabbits ( Sylvilagus audubonii ) in relation to annual rainfall and plant production in both black grama ( Bouteloua eriopoda ) grassland and creosotebush ( Larrea tridentata ) shrubland habitats in the northern Chihuahuan Desert. We found that both species of rabbits were more abundant in black grama grassland than in creosotebush shrubland and that plant production was positively correlated with rainfall at both habitats. However, rabbit densities were not positively correlated with rainfall or plant production in either habitat. In fact, both species of rabbits exhibited gradual, multiyear changes in abundance rather than the patterns of high annual variation observed in desert rodent communities. Our findings of no significant relationship between plant production and rabbit densities indicate that rabbit abundance in the northern Chihuahuan Desert may not be strongly regulated by short-term, bottom-up effects of annual variation in plant production. Long-term trends indicate that other factors such as disease or predation may be equally or more important. We suggest that future research evaluate both top-down and bottom-up influences to elucidate the temporal dynamics of Chihuahuan Desert rabbit abundance. Se conoce poco sobre los patrones de abundancia de conejos desérticos en el suroeste de Norte America, particularmente en relación con las influencias potencialmente importantes de la precipitación y la producción de plantas. Llevamos a cabo una investigación de diez años sobre la densidad relativa de la liebre de California ( Lepus californicus ) y el conejo cola de algodón ( Sylvilagus audubonii ) en los hábitats tanto de pradera de grama negra ( Bouteloua eriopoda ) como de matorral de gobernadora ( Larrea tridentata ) en el norte del Desierto Chihuahuense, en relación con la precipitación y la producción anuales. Encontramos que ambas especies de conejo fueron más abundantes en la pradera de grama negra que en el matorral de gobernadora, y que la producción de plantas estuvo correlacionada positivamente con la precipitación en ambos hábitats. Sin embargo, las densidades de conejos no estuvieron correlacionadas positivamente con la precipitación o con la producción de plantas en ninguno de los dos hábitats. De hecho, en cuanto a la fluctuación de su abundancia, las dos especies de conejo exhibieron tendencias graduales a lo largo de varios años, en comparación con los patrones de gran variación anual que se han observado en comunidades de roedores desérticos. La falta de una relación significativa entre la producción de plantas y la abundancia de conejos, indica que la abundancia de conejos en el norte del Desierto Chihuahuense no está fuertemente regulada por los efectos ascendentes a corto plazo de la variación anual en la producción de plantas. Los cambios reflejados en las tendencias a largo plazo indican que otros factores como las enfermedades o la depredación pueden ser de igual o mayor importancia, y sugerimos que investigaciones futuras deberán evaluar tanto las influencias ascendentes como las descendentes para entender las dinámicas temporales en la abundancia de conejos del Desierto Chihuahuense.     

Aquatic invertebrate fauna of a northern prairie stream: range extensions and water quality characteristics

The benthic macroinvertebrate fauna of southern Saskatchewan, Canada, has received little attention relative to other regions of western North America. Therefore, little is known of the related aquatic ecosystem health and biogeography of regional aquatic insects. Here we present the results of an aquatic macroinvertebrate survey for the Pipestone Creek watershed in southeastern Saskatchewan. We qualitatively sampled aquatic macroinvertebrates in 5 sites on 4 dates through spring, summer, and fall 2006. Sampling produced 294 taxa of macroinvertebrates including 25 provincial range extensions to the southeast corner of the province. Presence/absence data of taxa grouped the sites into lentic and lotic sites. However, the relative proportions of the taxa varied greatly among sites, with no 2 sites having a community similarity greater than 50%. Functional feeding group analyses separated the sites into collector-dominated and scraper/grazer-dominated sites. However, the taxonomic make-up of the feeding groups varied among sites and also among dates. A modified Hilsenhoff Biotic Index of the site communities indicated that all were influenced by organic pollution. Results of this study suggest that although the watershed is enormously diverse, its biological communities are likely influenced by organic pollution. Further, range expansions of species found here, such as the stonefly Perlesta placida , have implications for invasion pathways and post-glaciation species islands in a prairie landscape.     

Assessment of the uncertainties in temperature change in China during the last century

We have used the China Homogenized Historic Temperature dataset and some long-term station series of the neighbor countries from CRUTEM3, a 5°×5° gridded dataset of monthly mean temperature since 1900, to provide a 107-year record of surface tem-perature trends and variability. We derived a comprehensive set of uncertainty estimates to accompany the data: measurement and sampling errors, uncertainties in temperature bias estimates, and uncertainties arising from limited observational coverage on large-scale averages have all been estimated. We reanalysed the temperature changes during the period of record. The best estimates of trends for 1900–2006 with uncertainties at 95% confidence range are about 0.09±0.017°C/decade for the year as a whole, and 0.14±0.021°C/decade, 0.11±0.021°C/decade, 0.04±0.017°C/decade, and 0.07±0.017°C/decade for winter, spring, summer and autumn respectively. For 1954–2006, the trends for annual, winter, spring, summer and autumn are: 0.26±0.032°C/decade, 0.35±0.046°C/decade, 0.25±0.051°C/decade, 0.16±0.037°C/decade and 0.22±0.055°C/decade. Winter saw the most significant warming trend in both 1900–2006 and 1954–2006, while during the most recent period (the satellite era, 1979–2006), all the seasons show similar warming trends: 0.45±0.13°C/decade, 0.51±0.11°C/decade, 0.52±0.16°C/decade, 0.37±0.10°C/decade and 0.50±0.16°C/decade for annual, winter, spring, summer and autumn. Trends arising from urbanization have been evaluated as less than 5% of the total warming trend for 1951–2001, so this bias was not removed.     

Water capture by a desert beetle.

Some beetles in the Namib Desert collect drinking water from fog-laden wind on their backs. We show here that these large droplets form by virtue of the insect's bumpy surface, which consists of alternating hydrophobic, wax-coated and hydrophilic, non-waxy regions. The design of this fog-collecting structure can be reproduced cheaply on a commercial scale and may find application in water-trapping tent and building coverings, for example, or in water condensers and engines.     

Thiamine disulfide anhydride: A new fluorescent derivative of thiamine

Zusammenfassung Es wird die Isolierung eines neuen fluoreszierenden Thiaminderivates beschrieben.     

Blastomitogenic agents in leguminosae and other families

Résumé Des agents blastomitogéniques furent décelés non seulement dans les extraits de 4 genres propres à la famille des Légumineuses, mais aussi dans les graines d'espèces déterminées appartenant aux familles des Solanacées, Composées, Ephédracées et Clusiacées. Ces 4 dernières sources, non mentionnées au préalable, témoignent de la répartition variée de ces agents dans la nature et donnent lieu à des conjectures aux points de vue de leur affinité chimique, du mécanisme de leur action blastomitogénique, de leur rôle dans la physiologie végétale et de leur importance dans l'évolution.