三峡兴隆洞出土12~15万年前的古人类化石和象牙刻划

在重庆市奉节县兴隆洞发掘出土早期智人牙齿、石器、有人工刻划痕迹的象牙和丰富的哺乳动物化石. 这些材料的种类、特点和埋藏状况说明该洞穴是一处远古人类的居住遗址. 通过出土动物群推断和铀系年代测定, 古人类在该洞穴的生存行为发生在中更新世晚期, 距今12~15万年前. 这是在三峡地区首次发现的早期智人化石. 出现在剑齿象门齿上的刻划纹成组分布, 组成简单而抽象的图案, 是目前所知最早的人类有意识的刻划作品, 对原始艺术的起源和东亚地区现代人类的起源、演化和行为方式的研究具有重要的学术意义.     

An integrated semiconductor device enabling non-optical genome sequencing

The seminal importance of DNA sequencing to the life sciences, biotechnology and medicine has driven the search for more scalable and lower-cost solutions. Here we describe a DNA sequencing technology in which scalable, low-cost semiconductor manufacturing techniques are used to make an integrated circuit able to directly perform non-optical DNA sequencing of genomes. Sequence data are obtained by directly sensing the ions produced by template-directed DNA polymerase synthesis using all-natural nucleotides on this massively parallel semiconductor-sensing device or ion chip. The ion chip contains ion-sensitive, field-effect transistor-based sensors in perfect register with 1.2 million wells, which provide confinement and allow parallel, simultaneous detection of independent sequencing reactions. Use of the most widely used technology for constructing integrated circuits, the complementary metal-oxide semiconductor (CMOS) process, allows for low-cost, large-scale production and scaling of the device to higher densities and larger array sizes. We show the performance of the system by sequencing three bacterial genomes, its robustness and scalability by producing ion chips with up to 10 times as many sensors and sequencing a human genome.     

Maturation trends indicative of rapid evolution preceded the collapse of northern cod

Northern cod, comprising populations of Atlantic cod (Gadus morhua) off southern Labrador and eastern Newfoundland, supported major fisheries for hundreds of years. But in the late 1980s and early 1990s, northern cod underwent one of the worst collapses in the history of fisheries. The Canadian government closed the directed fishing for northern cod in July 1992, but even after a decade-long offshore moratorium, population sizes remain historically low. Here we show that, up until the moratorium, the life history of northern cod continually shifted towards maturation at earlier ages and smaller sizes. Because confounding effects of mortality changes and growth-mediated phenotypic plasticity are accounted for in our analyses, this finding strongly suggests fisheries-induced evolution of maturation patterns in the direction predicted by theory. We propose that fisheries managers could use the method described here as a tool to provide warning signals about changes in life history before more overt evidence of population decline becomes manifest.     

The cost of inbreeding in Arabidopsis

Population geneticists have long sought to estimate the distribution of selection intensities among genes of diverse function across the genome. Only recently have DNA sequencing and analytical techniques converged to make this possible. Important advances have come from comparing genetic variation within species (polymorphism) with fixed differences between species (divergence). These approaches have been used to examine individual genes for evidence of selection. Here we use the fact that the time since species divergence allows combination of data across genes. In a comparison of amino-acid replacements among species of the mustard weed Arabidopsis with those among species of the fruitfly Drosophila, we find evidence for predominantly beneficial gene substitutions in Drosophila but predominantly detrimental substitutions in Arabidopsis. We attribute this difference to the Arabidopsis mating system of partial self-fertilization, which corroborates a prediction of population genetics theory that species with a high frequency of inbreeding are less efficient in eliminating deleterious mutations owing to their reduced effective population size.     

Mutations in the polyglutamine binding protein 1 gene cause X-linked mental retardation

We found mutations in the gene PQBP1 in 5 of 29 families with nonsyndromic (MRX) and syndromic (MRXS) forms of X-linked mental retardation (XLMR). Clinical features in affected males include mental retardation, microcephaly, short stature, spastic paraplegia and midline defects. PQBP1 has previously been implicated in the pathogenesis of polyglutamine expansion diseases. Our findings link this gene to XLMR and shed more light on the pathogenesis of this common disorder.     

Relationship of diurnal habitat use of native stream fishes of the eastern Great Basin to pPresence of introduced salmonids

Introduced brown trout, Salmo trutta , are common to many streams of western North America. However, the ecological interactions between brown trout and native stream fishes are not well understood, particularly the nature and extent of antipredator responses of native species. We examined the effects of brown trout presence on diurnal habitat use by 2 small native fishes at a mesohabitat scale (e.g., pool, riffle, run, backwater, etc.). Adult and juvenile southern leatherside chub ( Lepidomeda aliciae , formerly Gila copei ) and juvenile mountain sucker ( Catostomus platyrhynchus ) were located in main channel pools in the absence of brown trout, but they were found almost exclusively in backwaters and cutoff pools (i.e., off-channel habitats) in streams where brown trout were abundant. Off-channel habitat appears to provide a refuge for native fishes in streams with abundant brown trout populations. Altered or degraded streams may not include sufficient off-channel refuge habitats to allow coexistence of native species and introduced brown trout.