Pistia stratiotes L. in Nigerian waters

Summary Pistia stratiotes L., a perennial water weed found in natural water bodies in Nigeria, removes organic and inorganic nutrients as it grows and spreads in the waters. In a lake which received a variety of pollutants, the plant reduced oxidizable organic matter (4-h permanganate value) by 61%, the biochemical oxygen demand by 85.3%, ammonia nitrogen by 95.3% and water soluble phosphorus by 85%. The plant also removed other mineral matter.     

The melanocyte differentiation program predisposes to metastasis after neoplastic transformation

The aggressive clinical behavior of melanoma suggests that the developmental origins of melanocytes in the neural crest might be relevant to their metastatic propensity. Here we show that primary human melanocytes, transformed using a specific set of introduced genes, form melanomas that frequently metastasize to multiple secondary sites, whereas human fibroblasts and epithelial cells transformed using an identical set of genes generate primary tumors that rarely do so. Notably, these melanomas have a metastasis spectrum similar to that observed in humans with melanoma. These observations indicate that part of the metastatic proclivity of melanoma is attributable to lineage-specific factors expressed in melanocytes and not in other cell types analyzed. Analysis of microarray data from human nevi shows that the expression pattern of Slug, a master regulator of neural crest cell specification and migration, correlates with those of other genes that are important for neural crest cell migrations during development. Moreover, Slug is required for the metastasis of the transformed melanoma cells. These findings indicate that melanocyte-specific factors present before neoplastic transformation can have a pivotal role in governing melanoma progression.     

Palaeotemperature trend for Precambrian life inferred from resurrected proteins

Biosignatures and structures in the geological record indicate that microbial life has inhabited Earth for the past 3.5 billion years or so. Research in the physical sciences has been able to generate statements about the ancient environment that hosted this life. These include the chemical compositions and temperatures of the early ocean and atmosphere. Only recently have the natural sciences been able to provide experimental results describing the environments of ancient life. Our previous work with resurrected proteins indicated that ancient life lived in a hot environment. Here we expand the timescale of resurrected proteins to provide a palaeotemperature trend of the environments that hosted life from 3.5 to 0.5 billion years ago. The thermostability of more than 25 phylogenetically dispersed ancestral elongation factors suggest that the environment supporting ancient life cooled progressively by 30 degrees C during that period. Here we show that our results are robust to potential statistical bias associated with the posterior distribution of inferred character states, phylogenetic ambiguity, and uncertainties in the amino-acid equilibrium frequencies used by evolutionary models. Our results are further supported by a nearly identical cooling trend for the ancient ocean as inferred from the deposition of oxygen isotopes. The convergence of results from natural and physical sciences suggest that ancient life has continually adapted to changes in environmental temperatures throughout its evolutionary history.     

No evidence of clonal somatic genetic alterations in cancer-associated fibroblasts from human breast and ovarian carcinomas

There is increasing evidence showing that the stromal cells surrounding cancer epithelial cells, rather than being passive bystanders, might have a role in modifying tumor outgrowth. The molecular basis of this aspect of carcinoma etiology is controversial. Some studies have reported a high frequency of genetic aberrations in carcinoma-associated fibroblasts (CAFs), whereas other studies have reported very low or zero mutation rates. Resolution of this contentious area is of critical importance in terms of understanding both the basic biology of cancer as well as the potential clinical implications of CAF somatic alterations. We undertook genome-wide copy number and loss of heterozygosity (LOH) analysis of CAFs derived from breast and ovarian carcinomas using a 500K SNP array platform. Our data show conclusively that LOH and copy number alterations are extremely rare in CAFs and cannot be the basis of the carcinoma-promoting phenotypes of breast and ovarian CAFs.     

RNA sequencing of pancreatic circulating tumour cells implicates WNT signalling in metastasis

Circulating tumour cells (CTCs) shed into blood from primary cancers include putative precursors that initiate distal metastases. Although these cells are extraordinarily rare, they may identify cellular pathways contributing to the blood-borne dissemination of cancer. Here, we adapted a microfluidic device for efficient capture of CTCs from an endogenous mouse pancreatic cancer model and subjected CTCs to single-molecule RNA sequencing, identifying Wnt2 as a candidate gene enriched in CTCs. Expression of WNT2 in pancreatic cancer cells suppresses anoikis, enhances anchorage-independent sphere formation, and increases metastatic propensity in vivo. This effect is correlated with fibronectin upregulation and suppressed by inhibition of MAP3K7 (also known as TAK1) kinase. In humans, formation of non-adherent tumour spheres by pancreatic cancer cells is associated with upregulation of multiple WNT genes, and pancreatic CTCs revealed enrichment for WNT signalling in 5 out of 11 cases. Thus, molecular analysis of CTCs may identify candidate therapeutic targets to prevent the distal spread of cancer.     

Photonic crystals: imaging by flat lens using negative refraction

The positive refractive index of conventional optical lenses means that they need curved surfaces to form an image, whereas a negative index of refraction allows a flat slab of a material to behave as a lens and focus electromagnetic waves to produce a real image. Here we demonstrate this unique feature of imaging by a flat lens, using the phenomenon of negative refraction in a photonic crystalline material. The key advance that enabled us to make this observation lies in the design of a photonic crystal with suitable dispersion characteristics to achieve negative refraction over a wide range of angles.     

A Switch Agent for Wireless Sensor Nodes with Dual Interfaces: Implementation and Evaluation

Data generation in wireless sensor networks could be bursty as it is dictated by the presence or absence of events of interest that generate these data. While conventional sensor nodes possessed only one radio interface, next generation sensor nodes are expected to have two (possibly more) radio interfaces, each with different ranges, capacities, and power consumptions. Equipping sensor nodes with dual radios has its own benefits and can be quite useful in handling bursty traffic while at the same time satisfying the application’s delivery requirements. In this paper, we propose an adaptive interface switch agent that intelligently selects the interface to be used for data transmission at a sensor node based on the data burst length or end-to-end delay while taking into consideration power consumption and throughput. The proposed work generalizes earlier works in this area to enable both the source nodes and intermediate data forwarding nodes to initiate the activation of high power radios so that they can be utilized to a higher degree for converge-cast communication. We have performed extensive simulations with sensor nodes containing both IEEE 802.15.4 and IEEE 802.11 compatible radios. Our simulation results indicate that the switch agent yields throughput, delay, and packet delivery ratio comparable to the higher bandwidth interface alone, without incurring much energy wastage.