Water capture by a desert beetle.

Some beetles in the Namib Desert collect drinking water from fog-laden wind on their backs. We show here that these large droplets form by virtue of the insect's bumpy surface, which consists of alternating hydrophobic, wax-coated and hydrophilic, non-waxy regions. The design of this fog-collecting structure can be reproduced cheaply on a commercial scale and may find application in water-trapping tent and building coverings, for example, or in water condensers and engines.     

Enzymatic capture of an extrahelical thymine in the search for uracil in DNA

The enzyme uracil DNA glycosylase (UNG) excises unwanted uracil bases in the genome using an extrahelical base recognition mechanism. Efficient removal of uracil is essential for prevention of C-to-T transition mutations arising from cytosine deamination, cytotoxic U*A pairs arising from incorporation of dUTP in DNA, and for increasing immunoglobulin gene diversity during the acquired immune response. A central event in all of these UNG-mediated processes is the singling out of rare U*A or U*G base pairs in a background of approximately 10(9) T*A or C*G base pairs in the human genome. Here we establish for the human and Escherichia coli enzymes that discrimination of thymine and uracil is initiated by thermally induced opening of T*A and U*A base pairs and not by active participation of the enzyme. Thus, base-pair dynamics has a critical role in the genome-wide search for uracil, and may be involved in initial damage recognition by other DNA repair glycosylases.     

FAS and NF-κB signalling modulate dependence of lung cancers on mutant EGFR

Human lung adenocarcinomas with activating mutations in EGFR (epidermal growth factor receptor) often respond to treatment with EGFR tyrosine kinase inhibitors (TKIs), but the magnitude of tumour regression is variable and transient. This heterogeneity in treatment response could result from genetic modifiers that regulate the degree to which tumour cells are dependent on mutant EGFR. Through a pooled RNA interference screen, we show that knockdown of FAS and several components of the NF-κB pathway specifically enhanced cell death induced by the EGFR TKI erlotinib in EGFR-mutant lung cancer cells. Activation of NF-κB through overexpression of c-FLIP or IKK (also known as CFLAR and IKBKB, respectively), or silencing of IκB (also known as NFKBIA), rescued EGFR-mutant lung cancer cells from EGFR TKI treatment. Genetic or pharmacologic inhibition of NF-κB enhanced erlotinib-induced apoptosis in erlotinib-sensitive and erlotinib-resistant EGFR-mutant lung cancer models. Increased expression of the NF-κB inhibitor IκB predicted for improved response and survival in EGFR-mutant lung cancer patients treated with EGFR TKI. These data identify NF-κB as a potential companion drug target, together with EGFR, in EGFR-mutant lung cancers and provide insight into the mechanisms by which tumour cells escape from oncogene dependence.     

The X-linked chronic granulomatous disease gene codes for the beta-chain of cytochrome b-245

Chronic granulomatous disease (CGD) is a rare inherited disorder associated with a profound predisposition to infection due to the lack of a microbicidal oxidase system in the phagocytes of these patients. This syndrome is most commonly inherited through a defect on the X chromosome and the only clearly defined component of the oxidase system, the very unusual cytochrome b (b-245), has been shown to be missing from the cells of these patients. This cytochrome is a heterodimer composed of an alpha-chain of relative molecular mass (Mr) 23,000 (23K) and a 76-92K beta-chain; neither are detectable in neutrophils from X-linked CGD subjects. The defective X-CGD gene has recently been cloned by 'reverse genetics' but the protein predicted from the proposed complementary DNA sequence was not identified. We have purified the beta-chain of the cytochrome and sequenced 43 amino acids from the N terminus. Almost complete homology was obtained between this sequence and that of the complementary nucleotides 19-147 of the sequence of the X-CGD gene, originally designated as a non-coding region.     

Mutations of the BRAF gene in human cancer

Cancers arise owing to the accumulation of mutations in critical genes that alter normal programmes of cell proliferation, differentiation and death. As the first stage of a systematic genome-wide screen for these genes, we have prioritized for analysis signalling pathways in which at least one gene is mutated in human cancer. The RAS RAF MEK ERK MAP kinase pathway mediates cellular responses to growth signals. RAS is mutated to an oncogenic form in about 15% of human cancer. The three RAF genes code for cytoplasmic serine/threonine kinases that are regulated by binding RAS. Here we report BRAF somatic missense mutations in 66% of malignant melanomas and at lower frequency in a wide range of human cancers. All mutations are within the kinase domain, with a single substitution (V599E) accounting for 80%. Mutated BRAF proteins have elevated kinase activity and are transforming in NIH3T3 cells. Furthermore, RAS function is not required for the growth of cancer cell lines with the V599E mutation. As BRAF is a serine/threonine kinase that is commonly activated by somatic point mutation in human cancer, it may provide new therapeutic opportunities in malignant melanoma.     

Aquatic invertebrate fauna of a northern prairie stream: range extensions and water quality characteristics

The benthic macroinvertebrate fauna of southern Saskatchewan, Canada, has received little attention relative to other regions of western North America. Therefore, little is known of the related aquatic ecosystem health and biogeography of regional aquatic insects. Here we present the results of an aquatic macroinvertebrate survey for the Pipestone Creek watershed in southeastern Saskatchewan. We qualitatively sampled aquatic macroinvertebrates in 5 sites on 4 dates through spring, summer, and fall 2006. Sampling produced 294 taxa of macroinvertebrates including 25 provincial range extensions to the southeast corner of the province. Presence/absence data of taxa grouped the sites into lentic and lotic sites. However, the relative proportions of the taxa varied greatly among sites, with no 2 sites having a community similarity greater than 50%. Functional feeding group analyses separated the sites into collector-dominated and scraper/grazer-dominated sites. However, the taxonomic make-up of the feeding groups varied among sites and also among dates. A modified Hilsenhoff Biotic Index of the site communities indicated that all were influenced by organic pollution. Results of this study suggest that although the watershed is enormously diverse, its biological communities are likely influenced by organic pollution. Further, range expansions of species found here, such as the stonefly Perlesta placida , have implications for invasion pathways and post-glaciation species islands in a prairie landscape.     

Comment on “Low-frequency sea level variation and its correlation with climate events in the Pacific”

The tide gauge results exhibit strong multi-decadal oscillations with detected periodicities up to a quasi-60 years. This translates in the requirement of at least 60-70 years of continuously recorded data without any quality issue and the use of a procedure appropriate for time series with periodic components to infer the acceleration trend. This is not what is done in many recent papers where the oscillating behaviour is neglected and short or incomplete records arbitrarily extended or reconstructed are used to infer wrong accelerating trends. All the tide gauges of enough length and quality show the sea levels are oscillating with important multi-decadal periodicities but absolutely not positively accelerating. The satellite radar altimeter reconstruction of the global mean sea level only available since 1993 shows despite the many uncertainties of a still imperfect procedure a not positively accelerating behaviour. The presence of acceleration in the reconstructed or extended data sets and the lack of acceleration in all the individual tide gauge measurements of enough quality and length certainly deserve further discussion. This is a comment to a previously published original paper made on the basis of other previously published results and not a new original paper.     

Rabbit abundance relative to rainfall and plant production in northern Chihuahuan Desert grassland and shrubland habitats

Rabbit abundance patterns in the North American Southwest are poorly known, particularly relative to the potentially important influences of rainfall and plant production. We conducted a 10-year study on the comparative densities of black-tailed jackrabbits ( Lepus californicus ) and desert cottontail rabbits ( Sylvilagus audubonii ) in relation to annual rainfall and plant production in both black grama ( Bouteloua eriopoda ) grassland and creosotebush ( Larrea tridentata ) shrubland habitats in the northern Chihuahuan Desert. We found that both species of rabbits were more abundant in black grama grassland than in creosotebush shrubland and that plant production was positively correlated with rainfall at both habitats. However, rabbit densities were not positively correlated with rainfall or plant production in either habitat. In fact, both species of rabbits exhibited gradual, multiyear changes in abundance rather than the patterns of high annual variation observed in desert rodent communities. Our findings of no significant relationship between plant production and rabbit densities indicate that rabbit abundance in the northern Chihuahuan Desert may not be strongly regulated by short-term, bottom-up effects of annual variation in plant production. Long-term trends indicate that other factors such as disease or predation may be equally or more important. We suggest that future research evaluate both top-down and bottom-up influences to elucidate the temporal dynamics of Chihuahuan Desert rabbit abundance. Se conoce poco sobre los patrones de abundancia de conejos desérticos en el suroeste de Norte America, particularmente en relación con las influencias potencialmente importantes de la precipitación y la producción de plantas. Llevamos a cabo una investigación de diez años sobre la densidad relativa de la liebre de California ( Lepus californicus ) y el conejo cola de algodón ( Sylvilagus audubonii ) en los hábitats tanto de pradera de grama negra ( Bouteloua eriopoda ) como de matorral de gobernadora ( Larrea tridentata ) en el norte del Desierto Chihuahuense, en relación con la precipitación y la producción anuales. Encontramos que ambas especies de conejo fueron más abundantes en la pradera de grama negra que en el matorral de gobernadora, y que la producción de plantas estuvo correlacionada positivamente con la precipitación en ambos hábitats. Sin embargo, las densidades de conejos no estuvieron correlacionadas positivamente con la precipitación o con la producción de plantas en ninguno de los dos hábitats. De hecho, en cuanto a la fluctuación de su abundancia, las dos especies de conejo exhibieron tendencias graduales a lo largo de varios años, en comparación con los patrones de gran variación anual que se han observado en comunidades de roedores desérticos. La falta de una relación significativa entre la producción de plantas y la abundancia de conejos, indica que la abundancia de conejos en el norte del Desierto Chihuahuense no está fuertemente regulada por los efectos ascendentes a corto plazo de la variación anual en la producción de plantas. Los cambios reflejados en las tendencias a largo plazo indican que otros factores como las enfermedades o la depredación pueden ser de igual o mayor importancia, y sugerimos que investigaciones futuras deberán evaluar tanto las influencias ascendentes como las descendentes para entender las dinámicas temporales en la abundancia de conejos del Desierto Chihuahuense.