Exploitation of structural and regulatory diversity in glutamate racemases

Glutamate racemase is an enzyme essential to the bacterial cell wall biosynthesis pathway, and has therefore been considered as a target for antibacterial drug discovery. We characterized the glutamate racemases of several pathogenic bacteria using structural and biochemical approaches. Here we describe three distinct mechanisms of regulation for the family of glutamate racemases: allosteric activation by metabolic precursors, kinetic regulation through substrate inhibition, and D-glutamate recycling using a d-amino acid transaminase. In a search for selective inhibitors, we identified a series of uncompetitive inhibitors specifically targeting Helicobacter pylori glutamate racemase that bind to a cryptic allosteric site, and used these inhibitors to probe the mechanistic and dynamic features of the enzyme. These structural, kinetic and mutational studies provide insight into the physiological regulation of these essential enzymes and provide a basis for designing narrow-spectrum antimicrobial agents.     

人类乙型肝炎样病毒核心蛋白中第7位疏水性氨基酸重复肚段区域的突变可以抑制病毒核衣壳的组装

人类乙型肝炎病毒的核衣壳由核心蛋白的二聚体所组成．但是,核心蛋白亚单位与亚单位之间相互作用的机制至今尚不清楚．研究发现,在人类乙型肝炎样病毒──土拨鼠肝炎病毒（WHV）核心蛋白的氨基端,存在着4个保守的疏水氨基酸残基（氨基酸位置101～102）．它们分别是亮氨酸101,亮氨酸108,缬氨酸115和苯丙氨酸122．这4个疏水氨基酸残基以每隔6个氨基酸残基而重复出现1次．它们被称为“第7位疏水性氨基酸重复肽段（hhr）”．由于蛋白质中的疏水键往往在蛋白质的相互作用中起重要作用,因此就在培养细胞系统中研究WHV核心蛋白的hhr区域在…     

人类乙型肝炎样病毒Pre—S1包膜蛋白的一个特定区域为乙肝病毒形成所必需

土拨鼠肝炎病毒（WHV）是一种哺乳类动物的肝炎病毒．这种病毒在结构和抗原怕与人类乙型肝炎病毒（HBV）非常相似．以往的研究报告指出,在一种称为鸭乙型肝炎病毒（DHBV）的Pre－S包膜蛋白中,含有一个特定区域．这一区域由天冬氨酸－天冬氨酸－脯氨酸－亮氨酸－亮氨酸（DDPLL）5个氨基酸残基所组成．已发现,这一区域在像DHBV这一类禽类乙肝病毒的病毒装配和分泌时所必需的（LenhoffR,SummersJ．JVirol,1994,68：4565～4571）．在WHV的Pre－S包胰蛋白中第201个氨基酸到第205个氨基酸所包含的顺序,甘氨酸－天冬氨酸－脯氨…