Metabolic network analysis of the causes and evolution of enzyme dispensability in yeast

Under laboratory conditions 80% of yeast genes seem not to be essential for viability. This raises the question of what the mechanistic basis for dispensability is, and whether it is the result of selection for buffering or an incidental side product. Here we analyse these issues using an in silico flux model of the yeast metabolic network. The model correctly predicts the knockout fitness effects in 88% of the genes studied and in vivo fluxes. Dispensable genes might be important, but under conditions not yet examined in the laboratory. Our model indicates that this is the dominant explanation for apparent dispensability, accounting for 37-68% of dispensable genes, whereas 15-28% of them are compensated by a duplicate, and only 4-17% are buffered by metabolic network flux reorganization. For over one-half of those not important under nutrient-rich conditions, we can predict conditions when they will be important. As expected, such condition-specific genes have a more restricted phylogenetic distribution. Gene duplicates catalysing the same reaction are not more common for indispensable reactions, suggesting that the reason for their retention is not to provide compensation. Instead their presence is better explained by selection for high enzymatic flux.     

JAVA在生物信息学和生物医学研究中的应用

本书针对过去几年内生物信息学研究飞速发展所带来的对于开源、可重复利用和面向对象的程序包和软件的需求，集中介绍了JAVA语言所具有的用于解决某些生物信息学和生物医学研究相关问题的功能。与一般编程语言书籍按部就班地介绍一种语言的语法不同，本书主要以生物信息学和生物医学研究中经常遇到的几个普遍问题为例，     

Effect of hypothalamic lesions on MSH content of the intermediate lobe of the pituitary gland in the rat

Zusammenfassung Es wird gezeigt, dass Elektrokoagulation in verschiedenen Teilen des basalen Hypothalamus einen Einfluss auf den Melanophorenhormongehalt im Hypophysenzwischenlappen der Ratte hat.     

Studies on the virus neutralizing capacity of anacid gastric juices

Zusammenfassung Es wird festgestellt, dass der Magensaft von Menschen mit Achlorhydrie die cytopathogene Wirkung der Poliomyelitis-Viren in HeLa-Gewebekultur neutralisiert. Die neutralisierende Wirkung des Magensaftes scheint vom homologen Antikörpertiter des Serums abhängig.     

Hidden magnetic excitation in the pseudogap phase of a high-T(c) superconductor

The elucidation of the pseudogap phenomenon of the high-transition-temperature (high-T(c)) copper oxides-a set of anomalous physical properties below the characteristic temperature T* and above T(c)-has been a major challenge in condensed matter physics for the past two decades. Following initial indications of broken time-reversal symmetry in photoemission experiments, recent polarized neutron diffraction work demonstrated the universal existence of an unusual magnetic order below T* (refs 3, 4). These findings have the profound implication that the pseudogap regime constitutes a genuine new phase of matter rather than a mere crossover phenomenon. They are furthermore consistent with a particular type of order involving circulating orbital currents, and with the notion that the phase diagram is controlled by a quantum critical point. Here we report inelastic neutron scattering results for HgBa(2)CuO(4+δ) that reveal a fundamental collective magnetic mode associated with the unusual order, and which further support this picture. The mode's intensity rises below the same temperature T* and its dispersion is weak, as expected for an Ising-like order parameter. Its energy of 52-56?meV renders it a new candidate for the hitherto unexplained ubiquitous electron-boson coupling features observed in spectroscopic studies.     

Unusual magnetic order in the pseudogap region of the superconductor HgBa2CuO4+delta

The pseudogap region of the phase diagram is an important unsolved puzzle in the field of high-transition-temperature (high-T(c)) superconductivity, characterized by anomalous physical properties. There are open questions about the number of distinct phases and the possible presence of a quantum-critical point underneath the superconducting dome. The picture has remained unclear because there has not been conclusive evidence for a new type of order. Neutron scattering measurements for YBa(2)Cu(3)O(6+delta) (YBCO) resulted in contradictory claims of no and weak magnetic order, and the interpretation of muon spin relaxation measurements on YBCO and of circularly polarized photoemission experiments on Bi(2)Sr(2)CaCu(2)O(8+delta)(refs 12, 13) has been controversial. Here we use polarized neutron diffraction to demonstrate for the model superconductor HgBa(2)CuO(4+delta) (Hg1201) that the characteristic temperature T* marks the onset of an unusual magnetic order. Together with recent results for YBCO, this observation constitutes a demonstration of the universal existence of such a state. The findings appear to rule out theories that regard T* as a crossover temperature rather than a phase transition temperature. Instead, they are consistent with a variant of previously proposed charge-current-loop order that involves apical oxygen orbitals, and with the notion that many of the unusual properties arise from the presence of a quantum-critical point.