Whole-genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing

Chlamydia trachomatis is responsible for both trachoma and sexually transmitted infections, causing substantial morbidity and economic cost globally. Despite this, our knowledge of its population and evolutionary genetics is limited. Here we present a detailed phylogeny based on whole-genome sequencing of representative strains of C. trachomatis from both trachoma and lymphogranuloma venereum (LGV) biovars from temporally and geographically diverse sources. Our analysis shows that predicting phylogenetic structure using ompA, which is traditionally used to classify Chlamydia, is misleading because extensive recombination in this region masks any true relationships present. We show that in many instances, ompA is a chimera that can be exchanged in part or as a whole both within and between biovars. We also provide evidence for exchange of, and recombination within, the cryptic plasmid, which is another key diagnostic target. We used our phylogenetic framework to show how genetic exchange has manifested itself in ocular, urogenital and LGV C. trachomatis strains, including the epidemic LGV serotype L2b.     

Deficits in synapse-to-neuron ratio due to early undernutrition show evidence of catch-up in later life

Summary 30-day-old rats undernourished from birth are known to have large deficits in the synapse-to-neuron ratio in certain brain regions. It has not been possible to demonstrate any statistically significant deficits in this ratio in animals undernourished from birth to 30 days but then provided with an ad libitum amount of food till 6 months of age.Acknowledgments. This work was supported by the Medical Research Council and the National Fund for Research into Crippling Diseases.