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The new measures computed here are the spectral detrended fluctuation anatysls (sDFA) and spectral multi-taper method (sMTM). sDFA applies the standard detrended fluctuation analysis (DFA) algorithm to power spectra, sMTM exploits the minute increases in the broadband response, typical of chaotic spectra approaching optimal values. The authors chose the Brusselator, Lorenz, and Duffing as the proposed models to measure and locate chaos and severe irregularity. Their series of chaotic parametric responses in short time-series is advantageous. Where cycles have only a limited number of slow oscillations such as for systems biology and medicine. It is difficult to create, locate, or monitor chaos. From 50 linearly increasing starting points applied to the chaos target function (CTF); the mean percentage increases in Kolmogorov-Sinai entropy (KS-Entropy) for the proposed chosen models; and p-values when the models were compared statistically by Kruskal-Wallis and ANOVA1 test with distributions assumed normal are Duffing (CTF: 31%: p 〈0.03); Lorenz (CTF: 2%: p 〈0.03), and I3russelator (CTF: 8%: p 〈0.01). Principal component analysis (PCA) is applied to assess the significance of the objective functions for tuning the chaotic response. From PCA the conclusion is that CTF is the most beneficial objective function overall delivering the highest increases in mean KS-Entropy. 相似文献
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用合成生物学的方法构建模块,使大肠杆菌遗传背景发生改变,生产红豆杉次生代谢产物紫杉醇前体物质——4(5),11(12)紫杉二烯(Taxadiene)。首先,用基因工程操作手段构建MEP2(2-C-Methyl-D-Erythritol-4-Phosphate,2-C-甲基-D-赤藓糖醇-4-磷酸途径)模块,这个模块包括4个基因:ispC、ispE、ispH和ispG,4个基因的表达产物属于大肠杆菌固有途径中的几个酶蛋白;模块构建好后,通过电穿孔的方式把MEP2转化到已含有上游MEP1模块和下游TG模块的大肠杆菌中,改变大肠杆菌固有的遗传信息。再用异丙基硫代半乳糖苷(IPTG)诱导所转入基因的表达,最后用气相色谱-质谱(GC-MS)方法检测表达情况。成功构建MEP2模块;通过与MEP1模块和TG模块的组合实验,MEP2模块能加强菌株表达紫杉二烯。结果表明,微生物大肠杆菌可以通过基因工程改造手段来生产植物天然药物紫杉醇前体物质4(5),11(12)紫杉二烯以及其他中间体。 相似文献
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Dalila de Fátima Ferreira Leonardo Esteves Lopes 《Journal of Natural History》2017,51(23-24):1425-1435
The Lined Seedeater (Sporophila lineola) is a migratory species that inhabits a variety of open habitats in South America. We studied the breeding biology and territorial behaviour of a colour-banded population of the species in the Universidade Federal de Viçosa, Campus Florestal (1–19,8808ºS, –44,4136ºW), during two breeding seasons (2014/2015 and 2015/2016), which spans from December to April. We monitored 74 nests of this species. The nest is a low cup supported between a fork. Nests are mainly built with grass stems and rootlets, with spider-web used to hold the material together and to bind the nest to its supporting plant. Females are solely responsible for nest building and incubation, which is synchronic, and also for feeding nestlings to a large extent. Males are responsible for defending the territory, which corresponds to a small portion of the home range restricted to the nest environs, and also feed the nestlings. Mean clutch size is two eggs (78% of nests monitored), with clutches of three (20.3%) and four (1.7%) eggs also observed. Eggs are whitish, covered with dark brown blotches and spots to a variable extent. Mean incubation period, considered as the period between the onset of incubation and hatching of the first egg, is 11 days. Nestling period, considered as the period between hatching of the first egg and fledging of the last young, is 10 days. During the first breeding season, the simple percentage of successful nests was 34.1%, while the Mayfield success was 29.8%, with slightly higher values observed during the second breeding season, with 39.4% and 35.7%, respectively. We recorded, for the first time, three cases of polygamy in the species. We also recorded breeding site fidelity for the first time in the species, with males returning to the same territory owned in a previous breeding season. 相似文献
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雷锦誌 《江西师范大学学报(自然科学版)》2015,(3):230-239
很多细胞行为受细胞内基因表达和蛋白质相互作用等生物化学反应的调控.这些细胞内的生化反应表现出明显的随机性,它成为描述细胞行为的可计算建模中不可忽略的因素.该文是关于计算系统生物学中随机模拟的基本理论和新进展的自洽综述.本综述从生化反应系统的基本假设出发,介绍关于生化反应内部噪声、外部随机扰动和包含时间滞后的反应过程的各种数学描述,包括化学主方程、化学福克尔-普朗克方程、化学速率方程、化学郎之万方程等;还介绍了相关的数值模拟方法,包括随机模拟算法和τ跳跃算法. 相似文献
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乙偶姻是一种重要的四碳平台化合物,在食品、医药、烟草、化妆品、化工等行业具有广泛的用途,其手性异构体(R)?乙偶姻和(S)-乙偶姻由于具有独特的立体结构,还可用于合成高附加值手性药物、化学中间体、液晶材料。本文综述了近年来利用酶法、全细胞催化法和基因工程菌发酵法制备手性乙偶姻的研究成果,介绍了利用代谢工程、合成生物学等技术在构建基因工程菌株,以及在提高乙偶姻产量、转化率和光学纯度方面所取得的研究进展。最后讨论了目前所存在的问题和难点,以及今后应该重点关注的研究方向。 相似文献
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Polypharmacology,which focuses on designing drugs to target multiple receptors,has emerged as a new paradigm in drug discovery.To rationally design multi-target drugs,it is fundamental to understand protein-ligand interactions on a proteome scale.We have developed a Proteome-wide Off-target Pipeline (POP) that integrates ligand binding site analysis,protein-ligand docking,the statistical analysis of docking scores,and electrostatic potential calculations.The utility of POP is demonstrated by a case study,in which the molecular mechanism of anti-cancer effect of Nelfinavir is hypothesized.By combining structural proteome-wide off-target identification and systems biology,it is possible for us to correlate drug perturbations with clinical outcomes. 相似文献
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The picture of synthetic biology as a kind of engineering science has largely created the public understanding of this novel field, covering both its promises and risks. In this paper, we will argue that the actual situation is more nuanced and complex. Synthetic biology is a highly interdisciplinary field of research located at the interface of physics, chemistry, biology, and computational science. All of these fields provide concepts, metaphors, mathematical tools, and models, which are typically utilized by synthetic biologists by drawing analogies between the different fields of inquiry. We will study analogical reasoning in synthetic biology through the emergence of the functional meaning of noise, which marks an important shift in how engineering concepts are employed in this field. The notion of noise serves also to highlight the differences between the two branches of synthetic biology: the basic science-oriented branch and the engineering-oriented branch, which differ from each other in the way they draw analogies to various other fields of study. Moreover, we show that fixing the mapping between a source domain and the target domain seems not to be the goal of analogical reasoning in actual scientific practice. 相似文献