龙虾D-甘油醛-3-磷酸脱氢酶与辅酶类似物结合的晶体学

与辅酶不同,辅酶类似物ＡＤＰ－ｒｉｂｏｓｅ和ＳＮＡＤ与Ｄ－甘油醛－３－磷酸脱氢酶（ＧＡＰＤＨ）的结合不表现协同性．用共晶方法和座滴汽相扩散技术培养出中国南海龙虾（Ｐａｌｉｎｕｒｕｓ ｖｅｒｓｉｃｏｌｏｒ）ＧＡＰＤＨ与ＡＤＰ－ｒｉｂｏｓｅ和ＳＮＡＤ复合物的晶体．Ｘ射线衍射数据分析表明它们的空间群均为Ｃ２,并具有类似晶胞参数,分别为 α＝ １５．２８０ ｎｍ, ｂ＝ １０．０３５ ｎｍ, ｃ＝ １２．８３１ ｎｍ, β＝１１０．２８°和α＝１５．３４１ ｎｍ,ｂ＝１０．０５１ ｎｍ,ｃ＝１２．８４４ｎｍ,β＝１１０．４８°．估算不对称单位合１个分子即４个亚基．与ＧＡＰＤＨ全酶和酶蛋白晶体比较,属于不同晶型．这个结果提示着辅酶类似物的结合产生了比较大的酶构象变化,而且这个构象变化不同于辅酶结合引起的构象变化．旋转函数计算结果表明,这两种辅酶类似物复合物的四聚体也具有明显的２２２分子对称性．它们的结构分析并与全酶和酶蛋白比较将为了解酶的协同性机理提供一些有益的线索．     

Crystallographic studies on the binding of coenzyme analogs to D-glyceraldehyde-3-phosphate dehydrogenase fromPalinurus versicolor

In contrast with the coezyme, two coenzyme analogs, ADP-ribose and SNAD, bind non-cooperatively to D-glyceraldehyde-3-phosphate dehydrogenase (GAPDH).Palinurus versicolor (PV) GAPDH complexed with ADP-ribose and SNAD has been crystallized by the method of sitting-drop vapor diffusion. X-ray diffraction data analysis reveals that both crystals belong to the same space group (C2), and have similar cell dimensions: a =152.80 Å,b =100.35 Å, c =128.31 Å,β =110.28° and a =153.41 Å,b =100.51 Å,c =128.44 Å,β =110.48°, respectively. It is estimated that the asymmetric unit in each crystal contains 4 subunits. This is a novel crystal form which is quite different from that previously reported for holoand apo-GAPDH from the same source. The result suggests that the binding of the two coenzyme analogs to GAPDH may lead to some significant conformational changes, which are different from those induced by the coenzyme binding. The self-rotation function indicates that the tetramer of these two GAPDH complexes also has good 222 symmetry. The structural analysis and the comparison with holoand apo-GAPDH may give a clue to the cooperative mechanism of the enzyme.     

Crystallographic studies on the binding of coenzyme analogs to D-glyceraldehyde-3-phosphate dehydrogenase from Palinurus versicolor

In contrast with the coezyme, two coenzyme analogs, ADP-ribose and SNAD, bind non-cooperatively to D-glyceraldehyde-3-phosphate dehydrogenase (GAPDH). Palinurus versicolor (PV) GAPDH complexed with ADP-ribose and SNAD has been crystallized by the method of sitting-drop vapor diffusion. X-ray diffraction data analysis reveals that both crystals belong to the same space group (C2), and have similar cell dimensions: a =152.80(A), b =100.35(A), c =128.31(A), b =110.28° and a =153.41(A), b =100.51(A), c =128.44(A), b =110.48° , respectively. It is estimated that the asymmetric unit in each crystal contains 4 subunits. This is a novel crystal form which is quite different from that previously reported for holo- and apo-GAPDH from the same source. The result suggests that the binding of the two coenzyme analogs to GAPDH may lead to some significant conformational changes, which are different from those induced by the coenzyme binding. The self-rotation function indicates that the tetramer of these two GAPDH complexes also has good 222 symmetry. The structural analysis and the comparison with holo- and apo-GAPDH may give a clue to the cooperative mechanism of the enzyme.